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2020

A 7 Tesla fMRI investigation of human tinnitus percept in cortical and subcortical auditory areas

Berlot, E., Arts, R., Smit, J., George, E., Gulban, O. F., Moerel, M., Stokroos, R., Formisano, E. & De Martino, F., 2020, In : NeuroImage: Clinical. 25, 11 p., 102166.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access

Adipose tissue in health and disease through the lens of its building blocks

Lenz, M., Arts, I. C. W., Peeters, R. L. M., de Kok, T. M. & Ertaylan, G., 26 Jun 2020, In : Scientific Reports. 10, 1, 14 p., 10433.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access

A dynamical model of the laminar BOLD response

Havlicek, M. & Uludag, K., 1 Jan 2020, In : Neuroimage. 204, 21 p., 116209.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access

Audiovisual and lexical cues do not additively enhance perceptual adaptation

Ullas, S., Formisano, E., Eisner, F. & Cutler, A., Aug 2020, In : Psychonomic Bulletin & Review. 27, 4, p. 707–715 9 p.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access

Behavioral effects of rhythm, carrier frequency and temporal cueing on the perception of sound sequences

Heynckes, M., De Weerd, P., Valente, G., Formisano, E. & De Martino, F., 5 Jun 2020, In : PLOS ONE. 15, 6, 17 p., 0234251.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access

Brain-Based Binary Communication Using Spatiotemporal Features of fNIRS Responses

Nagels-Coune, L., Benitez-Andonegui, A., Reuter, N., Lührs, M., Goebel, R., De Weerd, P., Riecke, L. & Sorger, B., 15 Apr 2020, In : Frontiers in Human Neuroscience. 14, 20 p., 113.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Open Access

Dynamic time-locking mechanism in the cortical representation of spoken words

Nora, A., Faisal, A., Seol, J., Renvall, H., Formisano, E. & Salmelin, R., 8 Jun 2020, In : eNeuro.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access

Effects of MP2RAGE B1+ sensitivity on inter-site T1 reproducibility and hippocampal morphometry at 7T

Haast, R. A. M., Lau, J. C., Ivanov, D., Menon, R. S., Uludağ, K. & Khan, A. R., 16 Sep 2020, In : Neuroimage. 224, 117373.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access

Effects of synaptic and myelin plasticity on learning in a network of Kuramoto phase oscillators (vol 29, 083122, 2019)

Karimian, M., Dibenedetto, D., Moerel, M., Burwick, T., Westra, R. L., De Weerd, P. & Senden, M., Jun 2020, In : Chaos. 30, 6, 1 p., 069902.

Research output: Contribution to journalArticleAcademicpeer-review

EFMviz: A COBRA Toolbox extension to visualize Elementary Flux Modes in Genome-Scale Metabolic Models

Sarathy, C., Kutmon, M., Lenz, M., Adriaens, M. E., Evelo, C. T. & Arts, I. C. W., 12 Feb 2020, In : Metabolites. 10, 2, 14 p., 66.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access

Feedback contribution to surface motion perception in the human early visual cortex

Marquardt, I., De Weerd, P., Schneider, M., Gulban, O. F., Ivanov, D., Wang, Y. & Uludağ, K., 4 Jun 2020, In : Elife. 9, 28 p., e50933.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access

High-density lipoprotein cholesterol efflux capacity is not associated with atherosclerosis and prevalence of cardiovascular outcome: The CODAM study

Josefs, T., Wouters, K., Tietge, U. J. F., Annema, W., Dullaart, R. P. F., Vaisar, T., Arts, I. C. W., van der Kallen, C. J. H., Stehouwer, C. D. A., Schalkwijk, C. G., Goldberg, I. J., Fisher, E. A. & van Greevenbroek, M. M. J., 2020, In : Journal of Clinical Lipidology. 14, 1, p. 122-132.e4 15 p.

Research output: Contribution to journalArticleAcademicpeer-review

Hippocampal-striatal functional connectivity supports processing of temporal expectations from associative memory

van de Ven, V., Lee, C., Lifanov, J., Kochs, S., Jansma, H. & De Weerd, P., Sep 2020, In : Hippocampus. 30, 9, p. 926-937 12 p.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access

Identification of Biological Pathways Contributing to Marbling in Skeletal Muscle to Improve Beef Cattle Breeding

Roudbari, Z., Coort, S. L., Kutmon, M., Eijssen, L., Melius, J., Sadkowski, T. & Evelo, C. T., 7 Feb 2020, In : Frontiers in Genetics. 10, 12 p., 1370.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access

Improving a probabilistic cytoarchitectonic atlas of auditory cortex using a novel method for inter-individual alignment

Gulban, O. F., Goebel, R., Moerel, M., Zachlod, D., Mohlberg, H., Amunts, K. & de Martino, F., 5 Aug 2020, In : Elife. 9, 29 p., e56963.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access

Interfering with a memory without erasing its trace

Lange, G., Senden, M., Radermachere, A. & De Weerd, P., Jan 2020, In : Neural Networks. 121, p. 339-355 17 p.

Research output: Contribution to journalArticleAcademicpeer-review

Interleaved lexical and audiovisual information can retune phoneme boundaries

Ullas, S., Formisano, E., Eisner, F. & Cutler, A., May 2020, In : Attention Perception & Psychophysics. 82, 4, p. 2018-2026 9 p.

Research output: Contribution to journalArticleAcademicpeer-review

Interneuron hypomyelination is associated with cognitive inflexibility in a rat model of schizophrenia

Maas, D. A., Eijsink, V. D., Spoelder, M., van Hulten, J. A., De Weerd, P., Homberg, J. R., Vallès, A., Nait-Oumesmar, B. & Martens, G. J. M., 11 May 2020, In : Nature Communications. 11, 1, 16 p., 2329.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access

Metabolic profiling of tissue-specific insulin resistance in human obesity: results from the Diogenes study and the Maastricht Study

DiOGenes Consortium, Jun 2020, In : International Journal of Obesity. 44, 6, p. 1376-1386 11 p.

Research output: Contribution to journalArticleAcademicpeer-review

Metabolomics Profile in Depression: A Pooled Analysis of 230 Metabolic Markers in 5283 Cases With Depression and 10,145 Controls

BBMRI-NL Metabolomics Consortium, 1 Mar 2020, In : Biological Psychiatry. 87, 5, p. 409-418 10 p.

Research output: Contribution to journalArticleAcademicpeer-review

microRNA expression profiles and personal monitoring of exposure to particulate matter

Mancini, F. R., Laine, J. E., Tarallo, S., Vlaanderen, J., Vermeulen, R., van Nunen, E., Hoek, G., Probst-Hensch, N., Imboden, M., Jeong, A., Gulliver, J., Chadeau-Hyam, M., Nieuwenhuijsen, M., de Kok, T. M., Piepers, J., Krauskopf, J., Kleinjans, J. C. S., Vineis, P. & Naccarati, A., Aug 2020, In : Environmental Pollution. 263, 7 p., 114392.

Research output: Contribution to journalArticleAcademicpeer-review

Neural Correlates of Phonetic Adaptation as Induced by Lexical and Audiovisual Context

Ullas, S., Hausfeld, L., Cutler, A., Eisner, F. & Formisano, E., 14 Jul 2020, In : Journal of Cognitive Neuroscience. p. 1-14 14 p.

Research output: Contribution to journalArticleAcademicpeer-review

Phase-dependent amplification of working memory content and performance

Ten Oever, S., De Weerd, P. & Sack, A. T., 14 Apr 2020, In : Nature Communications. 11, 1, 8 p., 1832.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access

Reorganization of sound location processing in the auditory cortex of blind humans

van der Heijden, K., Formisano, E., Valente, G., Zhan, M., Kupers, R. & de Gelder, B., Mar 2020, In : Cerebral Cortex. 30, 3, p. 1103–1116 14 p.

Research output: Contribution to journalArticleAcademicpeer-review

Spectro-Temporal Processing in a Two-Stream Computational Model of Auditory Cortex

Zulfiqar, I., Moerel, M. & Formisano, E., 22 Jan 2020, In : Frontiers in Computational Neuroscience. 13, 18 p., 95.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Open Access

TfamKnockdown Results in Reduction of mtDNA Copy Number, OXPHOS Deficiency and Abnormalities in Zebrafish Embryos

Otten, A. B. C., Kamps, R., Lindsey, P., Gerards, M., Pendeville-Samain, H., Muller, M., van Tienen, F. H. J. & Smeets, H. J. M., 12 Jun 2020, In : Frontiers in Cell and Developmental Biology. 8, 11 p., 381.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access

Use of deep learning methods to translate drug-induced gene expression changes from rat to human primary hepatocytes

O'Donovan, S. D., Driessens, K., Lopatta, D., Wimmenauer, F., Lukas, A., Neeven, J., Stumm, T., Smirnov, E., Lenz, M., Ertaylan, G., Jennen, D. G. J., van Riel, N. A. W., Cavill, R., Peeters, R. L. M. & de Kok, T. M. C. M., 11 Aug 2020, In : PLOS ONE. 15, 8, 20 p., e0236392.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access

Using high spatial resolution fMRI to understand representation in the auditory network

Moerel, M., Yacoub, E., Gulban, O. F., Lage-Castellanos, A. & De Martino, F., 31 Jul 2020, In : Progress in Neurobiology. 101887.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access

White matter structure and myelin-related gene expression alterations with experience in adult rats

Sampaio-Baptista, C., Vallès, A., Khrapitchev, A. A., Akkermans, G., Winkler, A. M., Foxley, S., Sibson, N. R., Roberts, M., Miller, K., Diamond, M. E., Martens, G. J. M., De Weerd, P. & Johansen-Berg, H., Apr 2020, In : Progress in Neurobiology. 187, 13 p., 101770.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
2019

Accelerated estimation and permutation inference for ACE modeling

Chen, X., Formisano, E., Blokland, G. A. M., Strike, L. T., McMahon, K. L., de Zubicaray, G. I., Thompson, P. M., Wright, M. J., Winkler, A. M., Ge, T. & Nichols, T. E., 15 Aug 2019, In : Human Brain Mapping. 40, 12, p. 3488-3507 20 p.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access

A Co-expression Analysis of the Placental Transcriptome in Association With Maternal Pre-pregnancy BMI and Newborn Birth Weight

Cox, B., Tsamou, M., Vrijens, K., Neven, K. Y., Winckelmans, E., de Kok, T. M., Plusquin, M. & Nawrot, T. S., 29 Apr 2019, In : Frontiers in Genetics. 10, p. 1-13 13 p., 354.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access

A computational model of postprandial adipose tissue lipid metabolism derived using human arteriovenous stable isotope tracer data

O'Donovan, S. D., Lenz, M., Vink, R. G., Roumans, N. J. T., de Kok, T. M. C. M., Mariman, E. C. M., Peeters, R. L. M., van Riel, N. A. W., van Baak, M. A. & Arts, I. C. W., Oct 2019, In : PLoS Computational Biology. 15, 10, 23 p., e1007400.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access

A zebrafish model to study small-fiber neuropathy reveals a potential role for GDAP1

Eijkenboom, I., Vanoevelen, J. M., Hoeijmakers, J. G. J., Wijnen, I., Gerards, M., Faber, C. G. & Smeets, H. J. M., Jul 2019, In : Mitochondrion. 47, p. 273-281 9 p.

Research output: Contribution to journalArticleAcademicpeer-review

Beyond Pathway Analysis: Identification of Active Subnetworks in Rett Syndrome

Miller, R. A., Ehrhart, F., Eijssen, L. M. T., Slenter, D. N., Curfs, L. M. G., Evelo, C. T., Willighagen, E. L. & Kutmon, M., 21 Feb 2019, In : Frontiers in Genetics. 10, 10 p., 59.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access

Characterization of disease-specific cellular abundance profiles of chronic inflammatory skin conditions from deconvolution of biopsy samples

Garza, Z. C. F., Lenz, M., Liebmann, J., Ertaylan, G., Born, M., Arts, I. C. W., Hilbers, P. A. J. & van Riel, N. A. W., 17 Aug 2019, In : BMC Medical Genomics. 12, 1, 14 p., 121.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access

Consumption of Nitrate-Rich Beetroot Juice with or without Vitamin C Supplementation Increases the Excretion of Urinary Nitrate, Nitrite, and N-nitroso Compounds in Humans

Berends, J. E., van den Berg, L. M. M., Guggeis, M. A., Henckens, N. F. T., Hossein, I. J., de Joode, M. E. J. R., Zamani, H., van Pelt, K. A. A. J., Beelen, N. A., Kuhnle, G. G., de Kok, T. M. C. M. & Van Breda, S. G. J., 1 May 2019, In : International Journal of Molecular Sciences. 20, 9, 15 p., 2277.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access

Correlating Infant Fecal Microbiota Composition and Human Milk Oligosaccharide Consumption by Microbiota of 1-Month-Old Breastfed Infants

Borewicz, K., Gu, F., Saccenti, E., Arts, I. C. W., Penders, J., Thijs, C., van Leeuwen, S. S., Lindner, C., Nauta, A., van Leusen, E., Schols, H. A. & Smidt, H., Jul 2019, In : Molecular Nutrition & Food Research. 63, 13, p. 1-13 13 p., 1801214.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access

Cortical encoding of speech enhances task-relevant acoustic information

Rutten, S., Santoro, R., Hervais-Adelman, A., Formisano, E. & Golestani, N., Sep 2019, In : Nature human behaviour. 3, 9, p. 974-987 14 p.

Research output: Contribution to journalArticleAcademic

CyTargetLinker app update: A flexible solution for network extension in Cytoscape

Kutmon, M., Ehrhart, F., Willighagen, E. L., Evelo, C. T. & Coort, S. L., 13 Aug 2019, In : F1000Research. 7, p. 743

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
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DNA methylation profiling implicates exposure to PCBs in the pathogenesis of B-cell chronic lymphocytic leukemia

Georgiadis, P., Gavriil, M., Rantakokko, P., Ladoukakis, E., Botsivali, M., Kelly, R. S., Bergdahl, I. A., Kiviranta, H., Vermeulen, R. C. H., Spaeth, F., Hebbels, D. G. A. J., Kleinjans, J. C. S., de Kok, T. M. C. M., Palli, D., Vineis, P., Kyrtopoulos, S. A., Gottschalk, R., van Leeuwen, D., Timmermans, L., Bendinelli, B. & 30 others, Portengen, L., Saberi-Hosnijeh, F., Melin, B., Hallmans, G., Lenner, P., Keun, H. C., Siskos, A., Athersuch, T. J., Kogevinas, M., Stephanou, E. G., Myridakis, A., Fazzo, L., De Santis, M., Comba, P., Airaksinen, R., Ruokojarvi, P., Gilthorpe, M., Fleming, S., Fleming, T., Tu, Y-K., Jonsson, B., Lundh, T., Chen, W. J., Lee, W-C., Hsiao, C. K., Chien, K-L., Kuo, P-H., Hung, H., Liao, S-F. & EnviroGenomarkers Consortium, May 2019, In : Environment International. 126, p. 24-36 13 p.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access

Effects of synaptic and myelin plasticity on learning in a network of Kuramoto phase oscillators

Karimian, M., Dibenedetto, D., Moerel, M., Burwick, T., Westra, R. L., De Weerd, P. & Senden, M., Aug 2019, In : Chaos. 29, 8, 15 p., 083122.

Research output: Contribution to journalArticleAcademicpeer-review

Homogenizing Estimates of Heritability Among SOLAR-Eclipse, OpenMx, APACE, and FPHI Software Packages in Neuroimaging Data

Kochunov, P., Patel, B., Ganjgahi, H., Donohue, B., Ryan, M., Hong, E. L., Chen, X., Adhikari, B., Jahanshad, N., Thompson, P. M., Van't Ent, D., den Braber, A., de Geus, E. J. C., Brouwer, R. M., Boomsma, D., Pol, H. E. H., de Zubicaray, G., McMahon, K. L., Martin, N. G., Wright, M. J. & 1 others, Nichols, T. E., 12 Mar 2019, In : Frontiers in Neuroinformatics. 13, 11 p., 16.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access