BioMathematics and BioInformatics

Research Output

2019

A computational model of postprandial adipose tissue lipid metabolism derived using human arteriovenous stable isotope tracer data

O'Donovan, S. D., Lenz, M., Vink, R. G., Roumans, N. J. T., de Kok, T. M. C. M., Mariman, E. C. M., Peeters, R. L. M., van Riel, N. A. W., van Baak, M. A. & Arts, I. C. W., Oct 2019, In : PLoS Computational Biology. 15, 10, 23 p., e1007400.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access

A Machine Learning Approach to Algorithm Selection for Exact Computation of Treewidth

Slavchev, B., Masliankova, E. & Kelk, S., Sep 2019, In : Algorithms. 12, 10, 20 p., 200.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access

An energy efficient gait for humanoid robots walking on even and uneven terrains

Sun, Z., 2019, Maastricht: Maastricht University.

Research output: ThesisDoctoral ThesisInternal

Open Access
File
362 Downloads (Pure)

A Third Strike Against Perfect Phylogeny

Van Iersel, L., Jones, M. & Kelk, S., Sep 2019, In : Systematic Biology. 68, 5, p. 814-827 14 p.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access

A Tight Kernel for Computing the Tree Bisection and Reconnection Distance between Two Phylogenetic Trees

Kelk, S. & Linz, S., 2019, In : Siam Journal on Discrete Mathematics. 33, 3, p. 1556-1574 19 p.

Research output: Contribution to journalArticleAcademicpeer-review

Comparison of Activation Times Estimation for Potential-Based ECG Imaging

Schaufelberger, M., Schuler, S., Bear, L., Cluitmans, M., Coll-Font, J., Onak, Ö. N., Dössel, O. & Brooks, D., Sep 2019, In : Computing in Cardiology. 46

Research output: Contribution to journalArticleAcademicpeer-review

Deciding the existence of a cherry-picking sequence is hard on two trees

Döcker, J., Van Iersel, L., Kelk, S. & Linz, S., 15 May 2019, In : Discrete Applied Mathematics. 260, p. 131-143 13 p.

Research output: Contribution to journalArticleAcademicpeer-review

Detection of Spatio-Temporal Recurrent Patterns in Dynamical Systems

Bonizzi, P., Peeters, R., Zeemering, S., van Hunnik, A., Meste, O. & Karel, J., 2 Aug 2019, In : Frontiers in Applied Mathematics and Statistics. 5, 36

Research output: Contribution to journalArticleAcademicpeer-review

Open Access

Effects of synaptic and myelin plasticity on learning in a network of Kuramoto phase oscillators

Karimian, M., Dibenedetto, D., Moerel, M., Burwick, T., Westra, R. L., De Weerd, P. & Senden, M., Aug 2019, In : Chaos. 29, 8, 15 p., 083122.

Research output: Contribution to journalArticleAcademicpeer-review

Finding a most parsimonious or likely tree in a network with respect to an alignment

Kelk, S., Pardi, F., Scornavacca, C. & Van Iersel, L., 1 Jan 2019, In : Journal of Mathematical Biology. 78, 1-2, p. 527-547 21 p.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access

Foundations of Digital Archæoludology

Browne, C., Soemers, D., Piette, E., Stephenson, M., Conrad, M., Crist III, W., Depaulis, T., Duggan, E., Horn, F., Kelk, S., Lucas, S. M., Neto, J. P., Parlett, D., Saffidine, A., Schadler, U., Silva, J. N., Voogt, A. D. & Winands, M., 31 May 2019

Research output: Book/ReportReportAcademic

File
12 Downloads (Pure)

Inference on Marshall-Olkin Bivariate Exponential in the Presence of Dependent Left Censoring

Davarzani, N., Golparvar, L. & Parsian, A., Mar 2019, In : Journal of Statistical Theory and Practice. 13, 1, 17 p., 21.

Research output: Contribution to journalArticleAcademicpeer-review

Integrality gaps for colorful matchings

Kelk, S. & Stamoulis, G., May 2019, In : Discrete Optimization. 32, p. 73-92 20 p.

Research output: Contribution to journalArticleAcademicpeer-review

Integrative Multi-Omics Analysis Of Human Atherosclerosis Reveals An Intraplaque Bleeding Associated Network, Which Offers Better Prediction Of Disease Stage

Jin, H., Goossens, P., Karel, J., Daemen, M., Sluimer, J. & Biessen, E., 3 Aug 2019, In : Atherosclerosis. 287, p. e63-e63 1 p., EAS19-0625.

Research output: Contribution to journalConference Abstract/Poster in journalAcademic

Open Access
File
311 Downloads (Pure)

Motion-based object segmentation in video sequences

Zhao, W., 2019, Maastricht.

Research output: ThesisDoctoral ThesisInternal

Open Access
File
337 Downloads (Pure)

Personalized Ventricular Arrhythmia Simulation Framework to Study Vulnerable Trigger Locations on Top of Scar Substrate

Lau, K., Groth, A., Waechter-Stehle, I., Nguyen, U., Volders, P., Heijman, J., Weese, J. & Cluitmans, M., 2019, Computing in Cardiology (CinC). Vol. 46. 4 p.

Research output: Chapter in Book/Report/Conference proceedingConference article in proceedingAcademicpeer-review

Open Access

Resonance-driven ion transport and selectivity in prokaryotic ion channels

Westra, R. L., 23 Dec 2019, In : Physical Review E. 100, 6, 32 p., 062410.

Research output: Contribution to journalArticleAcademicpeer-review

The application of omics-based human liver platforms for investigating the mechanism of drug-induced hepatotoxicity in vitro

Jiang, J., Pieterman, C. D., Ertaylan, G., Peeters, R. L. M. & de Kok, T. M. C. M., 5 Oct 2019, In : Archives of Toxicology. 93, 11, p. 3067-3098 32 p.

Research output: Contribution to journalReview articleAcademicpeer-review

Open Access

To the Editor-Interpretation of electrograms is key to understand the clinical potential of ECGI

Cluitmans, M. J. M., Stoks, J. & Volders, P. G. A., Jun 2019, In : Heart Rhythm. 16, 6, p. E51-E52 4 p.

Research output: Contribution to journalComment/Letter to the editorAcademicpeer-review

Treewidth of display graphs: bounds, brambles and applications

Janssen, R., Jones, M., Kelk, S., Stamoulis, G. & Wu, T., 2019, In : Journal of Graph Algorithms and Applications. 23, 4, p. 715-743

Research output: Contribution to journalArticleAcademicpeer-review

2018

An Ensemble Approach to Time Dependent Classification

van Daalen, F., Smirnov, E., Davarzani, N., Peeters, R., Karel, J. & Brunner-La Rocca, H., 20 Dec 2018, 17th IEEE International Conference on Machine Learning and Applications. IEEE, 5 p.

Research output: Chapter in Book/Report/Conference proceedingConference article in proceedingAcademicpeer-review

Biomarker discovery in heart failure

Davarzani, N., 2018, Maastricht: Maastricht University. 143 p.

Research output: ThesisDoctoral ThesisInternal

Open Access
File
493 Downloads (Pure)

Conformal feature-selection wrappers for instance transfer

Zhou, S., Smirnov, E., Schoenmakers, G., Peeters, R. & Jiang, T., 2018, Proceedings of the 7th Symposium on Conformal and Probabilistic Prediction and Applications, COPA 2018, 11-13 June 2018, Maastricht, The Netherlands.. Proceedings of Machine Learning Research, Vol. 91. p. 96-113 18 p.

Research output: Chapter in Book/Report/Conference proceedingConference article in proceedingAcademicpeer-review

Heterogeneous Domain Adaptation Based on Class Decomposition Schemes

Ismailoglu, F., Smirnov, E., Peeters, R., Zhou, S. & Collins, P., 19 Jun 2018, Advances in Knowledge Discovery and Data Mining: PAKDD 2018. Phung, D., Tseng, V., Webb, G., Ho, B., Ganji, M. & Rashidi, L. (eds.). Cham: Springer, p. 169-182 (Lecture Notes in Computer Science, Vol. 10937).

Research output: Chapter in Book/Report/Conference proceedingConference article in proceedingAcademicpeer-review

Heterogeneous Domain Adaptation for IHC Classification of Breast Cancer Subtypes

Ismailoglu, F., Cavill, R., Smirnov, E., Zhou, S., Collins, P. & Peeters, R., 24 Oct 2018, In : IEEE/ACM Transactions on Computational Biology and Bioinformatics.

Research output: Contribution to journalArticleAcademicpeer-review

Myocardial Ischemia Diagnosis Using a Reduced Lead System

Aranda Hernandez, A., Bonizzi, P., Karel, J. & Peeters, R., Jul 2018, IEEE Engineering in Medicine and Biology Society. 2018. p. 5302-5305 4 p.

Research output: Chapter in Book/Report/Conference proceedingConference article in proceedingAcademicpeer-review

Novel concept to guide systolic heart failure medication by repeated biomarker testing—results from TIME-CHF in context of predictive, preventive, and personalized medicine

Davarzani, N., Sanders-van Wijk, S., Maeder, M. T., Rickenbacher, P., Smirnov, E., Karel, J., Suter, T., de Boer, R. A., Block, D., Rolny, V., Zaugg, C., Pfisterer, M. E., Peeters, R. & Brunner-La Rocca, H., Jun 2018, In : The EPMA Journal. 9, 2, p. 161-173 13 p.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access

On a Fixed Haplotype Variant of the Minimum Error Correction Problem

Goblet, A., Kelk, S., Mihalák, M. & Stamoulis, G., 29 Jun 2018, Computing and Combinatorics. COCOON 2018. Wang, L. & Zhu, D. (eds.). Springer Verlag, p. 554-566 (Lecture Notes in Computer Science, Vol. 10976).

Research output: Chapter in Book/Report/Conference proceedingConference article in proceedingAcademicpeer-review

On Unrooted and Root-Uncertain Variants of Several Well-Known Phylogenetic Network Problems

Van Iersel, L., Kelk, S., Stamoulis, G., Stougie, L. & Boes, O., 1 Nov 2018, In : Algorithmica. 80, 11, p. 2993-3022 30 p.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access

Orthogonal Matched Wavelets with Vanishing Moments: A Sparsity Design Approach

Karel, J. & Peeters, R., Aug 2018, In : Circuits Systems and Signal Processing. 37, 8, p. 3487-3514 28 p.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access

Performance Analysis of T-Wave-Offset Detection Algorithms on Patients With Cardiac Diseases

Nairn, D., Bonizzi, P., Karel, J. & Aranda Hernandez, A. R., 25 Sep 2018, Computing in Cardiology.

Research output: Chapter in Book/Report/Conference proceedingConference article in proceedingAcademicpeer-review

Predicting changes to I-Na from missense mutations in human SCN5A

Clerx, M., Heijman, J., Collins, P. & Volders, P. G. A., 24 Aug 2018, In : Scientific Reports. 8, 1, 13 p., 12797.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access

Prognostic value of pathological lymph node status and primary tumour regression grading following neoadjuvant chemotherapy - results from the MRC OE02 oesophageal cancer trial

Davarzani, N., Hutchins, G. G. A., West, N. P., Hewitt, L. C., Nankivell, M., Cunningham, D., Allum, W. H., Smyth, E., Valeri, N., Langley, R. E. & Grabsch, H. I., Jun 2018, In : Histopathology. 72, 7, p. 1180-1188 9 p.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access

Reply to the letter from Bhagirath etal. Imaging for cardiac resynchronisation therapy requires cardiac magnetic resonance

Nguyen, U. C., Cluitmans, M. J. M., Prinzen, F. W., Mihl, C. & Vernooy, K., Dec 2018, In : Netherlands Heart Journal. 26, 12, p. 641-642 2 p.

Research output: Contribution to journalComment/Letter to the editorAcademicpeer-review

Open Access

Spatial and nonspatial evolutionary games and their applications

You, L., 2018, Maastricht: Maastricht University. 169 p.

Research output: ThesisDoctoral ThesisInternal

Open Access
File
388 Downloads (Pure)

Speed Estimation and Abnormality Detection From Surveillance Cameras

Giannakeris, P., Kaltsa, V., Avgerinakis, K., Briassouli, A., Vrochidis, S. & Kompatsiaris, I., 18 Jun 2018, CVPR AIC 2018 - Computer Vision and Pattern Recognition Workshop NVIDIA AI City Challenge.

Research output: Chapter in Book/Report/Conference proceedingConference article in proceedingAcademicpeer-review

116 Downloads (Pure)

Treewidth distance on phylogenetic trees

Kelk, S., Stamoulis, G. & Wu, T., 30 Jun 2018, In : Theoretical Computer Science. 731, p. 99-117 19 p.

Research output: Contribution to journalArticleAcademicpeer-review

Twelve Dimensional Vectorcardiography. Is More Better?

Aranda Hernandez, A. R., Bonizzi, P., Karel, J. & Peeters, R., 25 Sep 2018, Computing in Cardiology.

Research output: Chapter in Book/Report/Conference proceedingConference article in proceedingAcademicpeer-review

Unknown Crowd Event Detection from Phase-Based Statistics

Briassouli, A., 28 Nov 2018, AVSS 2018: 15th IEEE International Conference on Advanced Video and Signal-based Surveillance.

Research output: Chapter in Book/Report/Conference proceedingConference article in proceedingAcademicpeer-review

Validation and Opportunities of Electrocardiographic Imaging: From Technical Achievements to Clinical Applications

Cluitmans, M., Brooks, D. H., MacLeod, R., Dossel, O., Guillem, M. S., van Dam, P. M., Svehlikova, J., He, B., Sapp, J., Wang, L. & Bear, L., 20 Sep 2018, In : Frontiers in physiology. 9, 19 p., 1305.

Research output: Contribution to journalReview articleAcademicpeer-review

Open Access

Wavelet-promoted sparsity for non-invasive reconstruction of electrical activity of the heart

Cluitmans, M., Karel, J., Bonizzi, P., Volders, P., Westra, R. & Peeters, R., Nov 2018, In : Medical & Biological Engineering & Computing. 56, 11, p. 2039-2050 12 p.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
2017

3D Motion Consistency Analysis for Segmentation in 2D Video Projection

Zhao, W., Roos, N. & Peeters, R., 2017, Computer Analysis of Images and Patterns. Felsberg, M., Heyden, A. & Krüger, N. (eds.). Cham: Springer, p. 440-452 13 p.

Research output: Chapter in Book/Report/Conference proceedingConference article in proceedingAcademicpeer-review

A Bayesian analysis for the bivariate geometric distribution in the presence of covariates and censored data

Davarzani, N., Achcar, J. A., Peeters, R. & Smirnov, E., 2017, In : Journal of Statistics and Management Systems. 20, 1, p. 1-16 16 p.

Research output: Contribution to journalArticleAcademicpeer-review

A Linear Bound on the Number of States in Optimal Convex Characters for Maximum Parsimony Distance

Boes, O., Fischer, M. & Kelk, S., 1 Mar 2017, In : IEEE/ACM Transactions on Computational Biology and Bioinformatics. 14, 2, p. 472-477 6 p.

Research output: Contribution to journalArticleAcademicpeer-review