Building an HIV data mashup using Bio2RDF

Marc-Alexandre Nolin; Michel Dumontier; Francois Belleau; Jacques Corbeil

doi:10.1093/bib/bbr003

Building an HIV data mashup using Bio2RDF

Marc-Alexandre Nolin, Michel Dumontier^*, Francois Belleau, Jacques Corbeil

^*Corresponding author for this work

Research output: Contribution to journal › Article › Academic › peer-review

Abstract

We present an update to the Bio2RDF Linked Data Network, which now comprises ?30 billion statements across 30 data sets. Significant changes to the framework include the accommodation of global mirrors, offline data processing and new search and integration services. The utility of this new network of knowledge is illustrated through a Bio2RDF-based mashup with microarray gene expression results and interaction data obtained from the HIV-1, Human Protein Interaction Database (HHPID) with respect to the infection of human macrophages with the human immunodeficiency virus type 1 (HIV-1).

Original language	English
Pages (from-to)	98-106
Journal	Briefings in Bioinformatics
Volume	13
Issue number	1
DOIs	https://doi.org/10.1093/bib/bbr003
Publication status	Published - Jan 2012
Externally published	Yes

Keywords

semantic web
linked data
mashup
HIV

Access to Document

10.1093/bib/bbr003

Cite this

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