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Research Output

2020

Characterization of the Impact of Daclizumab Beta on Circulating Natural Killer Cells by Mass Cytometry

Ranganath, T., Simpson, L. J., Ferreira, A-M., Seiler, C., Vendrame, E., Zhao, N., Fontenot, J. D., Holmes, S. & Blish, C. A., 24 Apr 2020, In : Frontiers in Immunology. 11, 13 p., 714.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access

Influenza-Induced Interferon Lambda Response Is Associated With Longer Time to Delivery Among Pregnant Kenyan Women

Seiler, C., Bayless, N. L., Vergara, R., Pintye, J., Kinuthia, J., Osborn, L., Matemo, D., Richardson, B. A., John-Stewart, G., Holmes, S. & Blish, C. A., 17 Mar 2020, In : Frontiers in Immunology. 11, 10 p., 452.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access

TIGIT is upregulated by HIV-1 infection and marks a highly functional adaptive and mature subset of natural killer cells

Vendrame, E., Seiler, C., Ranganath, T., Zhao, N. Q., Vergara, R., Alary, M., Labbé, A-C., Guédou, F., Poudrier, J., Holmes, S., Roger, M. & Blish, C. A., 1 May 2020, In : Aids. 34, 6, p. 801-813 13 p.

Research output: Contribution to journalArticleAcademicpeer-review

2019

Pregnancy-Induced Alterations in NK Cell Phenotype and Function

Le Gars, M., Seiler, C., Kay, A. W., Bayless, N. L., Starosvetsky, E., Moore, L., Shen-Orr, S. S., Aziz, N., Khatri, P., Dekker, C. L., Swan, G. E., Davis, M. M., Holmes, S. & Blish, C. A., 23 Oct 2019, In : Frontiers in Immunology. 10, p. 2469 13 p., 2469.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access

Uncertainty Quantification in Multivariate Mixed Models for Mass Cytometry Data

Seiler, C., Kronstad, L. M., Simpson, L. J., Le Gars, M., Vendrame, E., Blish, C. A. & Holmes, S. P., 10 Sep 2019.

Research output: Contribution to conferenceAbstractAcademic

Uncertainty Quantification in Multivariate Mixed Models for Mass Cytometry Data

Seiler, C., Kronstad, L. M., Simpson, L. J., Le Gars, M., Vendrame, E., Blish, C. A. & Holmes, S. P., 2 Apr 2019.

Research output: Contribution to conferencePosterAcademic

2018

Differential Induction of IFN-α and Modulation of CD112 and CD54 Expression Govern the Magnitude of NK Cell IFN-γ Response to Influenza A Viruses

Kronstad, L. M., Seiler, C., Vergara, R., Holmes, S. P. & Blish, C. A., 1 Oct 2018, In : Journal of Immunology. 201, 7, p. 2117-2131 15 p.

Research output: Contribution to journalArticleAcademicpeer-review

Multi-Table Differential Correlation Analysis of Neuroanatomical and Cognitive Interactions in Turner Syndrome

Seiler, C., Green, T., Hong, D., Chromik, L., Huffman, L., Holmes, S. & Reiss, A. L., Jan 2018, In : Neuroinformatics. 16, 1, p. 81-93 13 p.

Research output: Contribution to journalArticleAcademicpeer-review

2017

Bayesian Statistics in Computational Anatomy

Seiler, C., 2017, Statistical Shape and Deformation Analysis. Elsevier, p. 193-214 22 p.

Research output: Chapter in Book/Report/Conference proceedingChapterAcademic

Multivariate Heteroscedasticity Models for Functional Brain Connectivity

Seiler, C. & Holmes, S., 12 Dec 2017, In : Frontiers in Neuroscience. 11, p. 696 11 p., 696.

Research output: Contribution to journalArticleAcademicpeer-review

2014

Discussion of "Geodesic Monte Carlo on Embedded Manifolds"

Byrne, S., Girolami, M., Diaconis, P., Seiler, C., Holmes, S., Dryden, I. L., Kent, J. T., Pereyra, M., Shahbaba, B., Lan, S., Streets, J. & Simpson, D., 2014, In : Scandinavian Journal of Statistics. 41, 1

Research output: Contribution to journalArticleAcademicpeer-review

Image-based vs. mesh-based statistical appearance models of the human femur: implications for finite element simulations

Bonaretti, S., Seiler, C., Boichon, C., Reyes, M. & Büchler, P., Dec 2014, In : Medical Engineering & Physics. 36, 12, p. 1626-35 10 p.

Research output: Contribution to journalArticleAcademicpeer-review

Positive Curvature and Hamiltonian Monte Carlo

Seiler, C., Rubinstein-Salzedo, S. & Holmes, S., 2014, Advances in Neural Information Processing Systems 27. Ghahramani, Z., Welling, M., Cortes, C., Lawrence, N. D. & Weinberger, K. Q. (eds.). Curran Associates, Inc., p. 586-594 9 p.

Research output: Chapter in Book/Report/Conference proceedingConference article in proceedingAcademicpeer-review

Time-lapse microscopy and classification of 2D human mesenchymal stem cells based on cell shape picks up myogenic from osteogenic and adipogenic differentiation

Seiler, C., Gazdhar, A., Reyes, M., Benneker, L. M., Geiser, T., Siebenrock, K. A. & Gantenbein-Ritter, B., Sep 2014, In : Journal of Tissue Engineering and Regenerative Medicine. 8, 9, p. 737-46 10 p.

Research output: Contribution to journalArticleAcademicpeer-review

2013

Random spatial structure of geometric deformations and Bayesian nonparametrics

Seiler, C., Pennec, X. & Holmes, S., 2013, Geometric Science of Information. Springer, p. 120-127 8 p.

Research output: Chapter in Book/Report/Conference proceedingConference article in proceedingAcademicpeer-review

Regional analysis of left ventricle function using a cardiac-specific polyaffine motion model

Mcleod, K., Seiler, C., Toussaint, N., Sermesant, M. & Pennec, X., 2013, International Conference on Functional Imaging and Modeling of the Heart. p. 483-490 8 p.

Research output: Chapter in Book/Report/Conference proceedingConference article in proceedingAcademicpeer-review

Spatio-temporal dimension reduction of cardiac motion for group-wise analysis and statistical testing

McLeod, K., Seiler, C., Sermnesant, M. & Pennec, X., 2013, International Conference on Medical Image Computing and Computer-Assisted Intervention. Pt 2 ed. Vol. 16. p. 501-8 8 p. (Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention).

Research output: Chapter in Book/Report/Conference proceedingConference article in proceedingAcademicpeer-review

Validity of an automatic measure protocol in distal femur for allograft selection from a three-dimensional virtual bone bank system

Ritacco, L. E., Seiler, C., Farfalli, G. L., Nolte, L., Reyes, M., Muscolo, D. L. & Tinao, L. A., Jun 2013, In : Cell and Tissue Banking. 14, 2, p. 213-20 8 p.

Research output: Contribution to journalArticleAcademicpeer-review

2012

A near-incompressible poly-affine motion model for cardiac function analysis

McLeod, K., Seiler, C., Sermesant, M. & Pennec, X., 2012, Statistical Atlases and Computational Models of the Heart. Imaging and Modelling Challenges: Third International Workshop, STACOM 2012, Held in Conjunction with MICCAI 2012, Nice, France, October 5, 2012, Revised Selected Papers. Springer, p. 288-297 10 p. (Lecture Notes in Computer Science, Vol. 7746).

Research output: Chapter in Book/Report/Conference proceedingConference article in proceedingAcademicpeer-review

Capturing the multiscale anatomical shape variability with polyaffine transformation trees

Seiler, C., Pennec, X. & Reyes, M., Oct 2012, In : Medical Image Analysis. 16, 7, p. 1371-84 14 p.

Research output: Contribution to journalArticleAcademicpeer-review

Population-based design of mandibular plates based on bone quality and morphology

Bousleiman, H., Seiler, C., Iizuka, T., Nolte, L-P. & Reyes, M., 2012, International Conference on Medical Image Computing and Computer-Assisted Intervention. Pt 1 ed. Vol. 15. p. 66-73 8 p. (Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention).

Research output: Chapter in Book/Report/Conference proceedingConference article in proceedingAcademicpeer-review

Simultaneous multiscale polyaffine registration by incorporating deformation statistics

Seiler, C., Pennec, X. & Reyes, M., 2012, International Conference on Medical Image Computing and Computer-Assisted Intervention. Pt 2 ed. Vol. 15. p. 130-7 8 p. (Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention).

Research output: Chapter in Book/Report/Conference proceedingConference article in proceedingAcademicpeer-review

Statistical model based shape prediction from a combination of direct observations and various surrogates: application to orthopaedic research

Blanc, R., Seiler, C., Székely, G., Nolte, L-P. & Reyes, M., Aug 2012, In : Medical Image Analysis. 16, 6, p. 1156-66 11 p.

Research output: Contribution to journalArticleAcademicpeer-review

2011

Femur specific polyaffine model to regularize the log-domain demons registration

Seiler, C., Pennec, X., Ritacco, L. & Reyes, M., 2011, Medical Imaging 2011: Image Processing: Proceedings, Volume 7962, SPIE Medical Imaging, 12-17 February 2011. Dawant, B. M. & Haynor, D. R. (eds.). SPIE, Vol. 7962. 79620G. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; No. 31, Vol. 12).

Research output: Chapter in Book/Report/Conference proceedingConference article in proceedingAcademicpeer-review

Geometry-aware multiscale image registration via OBBTree-based polyaffine log-demons

Seiler, C., Pennec, X. & Reyes, M., 2011, International Conference on Medical Image Computing and Computer-Assisted Intervention. Pt 2 ed. Vol. 14. p. 631-8 8 p. (Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention).

Research output: Chapter in Book/Report/Conference proceedingConference article in proceedingAcademicpeer-review

Mesh-based vs. image-based statistical model of appearance of the human femur: A preliminary comparison study for the creation of finite element meshes

Bonaretti, S., Seiler, C., Boichon, C., Büchler, P. & Reyes, M., 2011, Mesh Processing in Medical Image Analysis Workshop MICCAI: 2011, Toronto, Canada. HAL

Research output: Chapter in Book/Report/Conference proceedingConference article in proceedingAcademicpeer-review

2010

Atlas-based segmentation of brain tumor images using a Markov random field-based tumor growth model and non-rigid registration

Bauer, S., Seiler, C., Bardyn, T., Buechler, P. & Reyes, M., 2010, IEEE Engineering in Medicine and Biology Society. Vol. 2010. p. 4080-3 4 p. (IEEE Engineering in Medicine and Biology Society).

Research output: Chapter in Book/Report/Conference proceedingConference article in proceedingAcademicpeer-review

Combined statistical model of bone shape and mechanical properties for bone and implant modeling

Bonaretti, S., Helgason, B., Seiler, C., Reyes, M. & Büchler, P., 2010, International Symposium on Computer Methods in Biomechanics and Biomedical Engineering: CMBBE February 2010, Valencia, Spain. HAL

Research output: Chapter in Book/Report/Conference proceedingConference article in proceedingAcademicpeer-review

Mesenchymal Stem Cell Classification during Differentiation Based on Shape Information

Seiler, C., Gazdhar, A., Geiser, T., Reyes, M. & Gantenbein-Ritter, B., 2010, Tissue Engineering and Regenerative Medicine International Society. HAL

Research output: Chapter in Book/Report/Conference proceedingConference Abstract/Poster in proceedingAcademic

Parametric regression of 3D medical images through the exploration of non-parametric regression models

Seiler, C., Pennec, X. & Reyes, M., 2010, IEEE International Symposium on Biomedical Imaging: From Nano to Macro. IEEE, p. 452-455 4 p.

Research output: Chapter in Book/Report/Conference proceedingConference article in proceedingAcademicpeer-review

2009

Automatic landmark propagation for left and right symmetry assessment of tibia and femur: a computational anatomy based approach

Seiler, C., Weber, S., Schmidt, W., Fischer, F., Reimers, N. & Reyes, M., 2009, Annual Meeting of the International Society for Computer Assisted Surgery.

Research output: Chapter in Book/Report/Conference proceedingConference Abstract/Poster in proceedingAcademic

Conditional variability of statistical shape models based on surrogate variables

Blanc, R., Reyes, M., Seiler, C. & Székely, G., 2009, International Conference on Medical Image Computing and Computer-Assisted Intervention. Pt 2 ed. Vol. 12. p. 84-91 8 p. (Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention).

Research output: Chapter in Book/Report/Conference proceedingConference article in proceedingAcademicpeer-review

Hierarchical Markov Random Fields applied to model soft tissue deformations on graphics hardware

Seiler, C., Büchler, P., Nolte, L-P., Reyes, M. & Paulsen, R., 2009, Recent Advances in the 3D Physiological Human. Springer, p. 133-148 16 p.

Research output: Chapter in Book/Report/Conference proceedingChapterAcademic