TY - JOUR
T1 - The Molecular Processes in the Trabecular Meshwork After Exposure to Corticosteroids and in Corticosteroid-Induced Ocular Hypertension
AU - Liesenborghs, Ilona
AU - Eijssen, Lars M. T.
AU - Kutmon, Martina
AU - Gorgeis, Theo G. M. E.
AU - Evelo, Chris T.
AU - Beckers, Henny J. M.
AU - Webers, Carroll A. B.
AU - Schouten, Johannes S. A. G.
N1 - Publisher Copyright:
© Copyright 2020 The Authors
PY - 2020/4
Y1 - 2020/4
N2 - PURPOSE. To identify processes that contribute to corticosteroid-induced ocular hypertension and candidate target genes for treatment.METHODS. A systematic search identified five human microarray datasets investigating the effect of dexamethasone versus a control medium on trabecular meshwork (TM) tissue. After thorough quality control, samples of low quality were removed, and the datasets were integrated. Additionally, a bovine RNA-sequencing dataset allowed to investigate differences in gene expression profiling between cows with and without corticosteroid-induced ocular hypertension (responders vs. nonresponders). The obtained datasets were used as input for parallel pathway analyses. Significantly changed pathways were clustered into functional categories and the results were further investigated. A network visualizing the differences between the responders and nonresponders was created.RESULTS. Seven functional pathway clusters were found to be significantly changed in TM cells exposed to dexamethasone versus a control medium and in TM cells of responders versus nonresponders: collagen, extracellular matrix, adhesion, WNT-signaling, inflammation, adipogenesis, and glucose metabolism. In addition, cell cycle and senescence were only significantly changed in responders versus nonresponders. The network of the differential gene expression between responders and nonresponders shows many connections between the identified processes via shared genes.CONCLUSIONS. Nine functional pathway clusters synthesize the molecular response to dexamethasone exposure in TM cells and are likely to be involved in the pathogenesis of corticosteroid-induced ocular hypertension.
AB - PURPOSE. To identify processes that contribute to corticosteroid-induced ocular hypertension and candidate target genes for treatment.METHODS. A systematic search identified five human microarray datasets investigating the effect of dexamethasone versus a control medium on trabecular meshwork (TM) tissue. After thorough quality control, samples of low quality were removed, and the datasets were integrated. Additionally, a bovine RNA-sequencing dataset allowed to investigate differences in gene expression profiling between cows with and without corticosteroid-induced ocular hypertension (responders vs. nonresponders). The obtained datasets were used as input for parallel pathway analyses. Significantly changed pathways were clustered into functional categories and the results were further investigated. A network visualizing the differences between the responders and nonresponders was created.RESULTS. Seven functional pathway clusters were found to be significantly changed in TM cells exposed to dexamethasone versus a control medium and in TM cells of responders versus nonresponders: collagen, extracellular matrix, adhesion, WNT-signaling, inflammation, adipogenesis, and glucose metabolism. In addition, cell cycle and senescence were only significantly changed in responders versus nonresponders. The network of the differential gene expression between responders and nonresponders shows many connections between the identified processes via shared genes.CONCLUSIONS. Nine functional pathway clusters synthesize the molecular response to dexamethasone exposure in TM cells and are likely to be involved in the pathogenesis of corticosteroid-induced ocular hypertension.
KW - corticosteroid-induced ocular hypertension
KW - gene expression
KW - trabecular meshwork
KW - bioinformatics
KW - candidate target genes
KW - INTRAOCULAR-PRESSURE RESPONSE
KW - GENE-EXPRESSION CHANGES
KW - EXTRACELLULAR-MATRIX
KW - MICROARRAY ANALYSIS
KW - CELL-PROLIFERATION
KW - DEXAMETHASONE
KW - BOVINE
KW - PATHWAY
KW - GLAUCOMA
KW - KEGG
U2 - 10.1167/iovs.61.4.24
DO - 10.1167/iovs.61.4.24
M3 - Article
C2 - 32305042
SN - 0146-0404
VL - 61
JO - Investigative Ophthalmology & Visual Science
JF - Investigative Ophthalmology & Visual Science
IS - 4
M1 - 24
ER -