SBML Level 3: an extensible format for the exchange and reuse of biological models

Sarah M. Keating, Dagmar Waltemath, Matthias Koenig, Fengkai Zhang, Andreas Draeger, Claudine Chaouiya, Frank T. Bergmann, Andrew Finney, Colin S. Gillespie, Tomas Helikar, Stefan Hoops, Rahuman S. Malik-Sheriff, Stuart L. Moodie, Ion I. Moraru, Chris J. Myers, Aurelien Naldi, Brett G. Olivier, Sven Sahle, James C. Schaff, Lucian P. SmithMaciej J. Swat, Denis Thieffry, Leandro Watanabe, Darren J. Wilkinson, Michael L. Blinov, Kimberly Begley, James R. Faeder, Harold F. Gomez, Thomas M. Hamm, Yuichiro Inagaki, Wolfram Liebermeister, Allyson L. Lister, Daniel Lucio, Eric Mjolsness, Carole J. Proctor, Karthik Raman, Nicolas Rodriguez, Clifford A. Shaffer, Bruce E. Shapiro, Joerg Stelling, Neil Swainston, Naoki Tanimura, John Wagner, Martin Meier-Schellersheim, Herbert M. Sauro, Bernhard Palsson, Hamid Bolouri, Hiroaki Kitano, Akira Funahashi, Henning Hermjakob, SBML Level 3 Community members, Chris Evelo, M. Kutmon

Research output: Contribution to journalReview articlepeer-review

Original languageEnglish
Article number9110
Number of pages21
JournalMolecular Systems Biology
Volume16
Issue number8
DOIs
Publication statusPublished - Aug 2020

Keywords

  • computational modeling
  • file format
  • interoperability
  • reproducibility
  • systems biology
  • SYSTEMS BIOLOGY
  • MARKUP LANGUAGE
  • SIMULATION
  • STANDARDS
  • SOFTWARE
  • INFORMATION
  • ENVIRONMENT
  • ANNOTATION
  • REPOSITORY
  • ONTOLOGY

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