Identification of microorganisms based on headspace analysis of volatile organic compounds by gas chromatography-mass spectrometry

A.W. Boots, A. Smolinska, J.J.B.N. van Berkel, R.R.R. Fijten, E.E. Stobberingh, M.L.L. Boumans, E.J. Moonen, E.F.M. Wouters, J.W. Dallinga, F.J. van Schooten

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Abstract

The identification of specific volatile organic compounds (VOCs) microorganisms may assist in developing a fast and accurate methodology determination of pulmonary bacterial infections in exhaled air. As a pulmonary bacteria were cultured and their headspace analyzed for the amount of excreted VOCs to select those compounds which are exclusively associated with specific microorganisms. Development of a rapid, methodology for identification of bacterial species may improve antibiotic therapy, ultimately leading to controlling the antibiotic problem. Two hundred bacterial headspace samples from four different microorganisms (Escherichia coli, Pseudomonas aeruginosa, Staphylococcus and Klebsiella pneumoniae) were analyzed by gas chromatography-mass to detect a wide array of VOCs. Statistical analysis of these volatiles the characterization of specific VOC profiles indicative for each Differences in VOC abundance between the bacterial types were determined ANalysis of VAriance-principal component analysis (ANOVA-PCA). These were visualized with PCA. Cross validation was applied to validate the We identified a large number of different compounds in the various thus demonstrating a highly significant difference in VOC occurrence of cultures compared to the medium and between the cultures themselves. Additionally, a separation between a methicillin-resistant and a methicillin-sensitive isolate of S. aureus could be made due to differences between compounds. ANOVA-PCA analysis showed that 25 VOCs differently profiled across the various microorganisms, whereas a PCA enabled the visualization of these clear differences between the We demonstrated that identification of the studied microorganisms, antibiotic susceptible and resistant S. aureus substrain, is possible selected number of compounds measured in the headspace of these in vitro results may translate into a breath analysis approach that has potential to be used as a diagnostic tool in medical microbiology.
Original languageEnglish
Article number027106
JournalJournal of Breath Research
Volume8
Issue number2
DOIs
Publication statusPublished - 1 Jan 2014

Cite this

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title = "Identification of microorganisms based on headspace analysis of volatile organic compounds by gas chromatography-mass spectrometry",
abstract = "The identification of specific volatile organic compounds (VOCs) microorganisms may assist in developing a fast and accurate methodology determination of pulmonary bacterial infections in exhaled air. As a pulmonary bacteria were cultured and their headspace analyzed for the amount of excreted VOCs to select those compounds which are exclusively associated with specific microorganisms. Development of a rapid, methodology for identification of bacterial species may improve antibiotic therapy, ultimately leading to controlling the antibiotic problem. Two hundred bacterial headspace samples from four different microorganisms (Escherichia coli, Pseudomonas aeruginosa, Staphylococcus and Klebsiella pneumoniae) were analyzed by gas chromatography-mass to detect a wide array of VOCs. Statistical analysis of these volatiles the characterization of specific VOC profiles indicative for each Differences in VOC abundance between the bacterial types were determined ANalysis of VAriance-principal component analysis (ANOVA-PCA). These were visualized with PCA. Cross validation was applied to validate the We identified a large number of different compounds in the various thus demonstrating a highly significant difference in VOC occurrence of cultures compared to the medium and between the cultures themselves. Additionally, a separation between a methicillin-resistant and a methicillin-sensitive isolate of S. aureus could be made due to differences between compounds. ANOVA-PCA analysis showed that 25 VOCs differently profiled across the various microorganisms, whereas a PCA enabled the visualization of these clear differences between the We demonstrated that identification of the studied microorganisms, antibiotic susceptible and resistant S. aureus substrain, is possible selected number of compounds measured in the headspace of these in vitro results may translate into a breath analysis approach that has potential to be used as a diagnostic tool in medical microbiology.",
author = "A.W. Boots and A. Smolinska and {van Berkel}, J.J.B.N. and R.R.R. Fijten and E.E. Stobberingh and M.L.L. Boumans and E.J. Moonen and E.F.M. Wouters and J.W. Dallinga and {van Schooten}, F.J.",
year = "2014",
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language = "English",
volume = "8",
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Identification of microorganisms based on headspace analysis of volatile organic compounds by gas chromatography-mass spectrometry. / Boots, A.W.; Smolinska, A.; van Berkel, J.J.B.N.; Fijten, R.R.R.; Stobberingh, E.E.; Boumans, M.L.L.; Moonen, E.J.; Wouters, E.F.M.; Dallinga, J.W.; van Schooten, F.J.

In: Journal of Breath Research, Vol. 8, No. 2, 027106, 01.01.2014.

Research output: Contribution to journalArticleAcademicpeer-review

TY - JOUR

T1 - Identification of microorganisms based on headspace analysis of volatile organic compounds by gas chromatography-mass spectrometry

AU - Boots, A.W.

AU - Smolinska, A.

AU - van Berkel, J.J.B.N.

AU - Fijten, R.R.R.

AU - Stobberingh, E.E.

AU - Boumans, M.L.L.

AU - Moonen, E.J.

AU - Wouters, E.F.M.

AU - Dallinga, J.W.

AU - van Schooten, F.J.

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N2 - The identification of specific volatile organic compounds (VOCs) microorganisms may assist in developing a fast and accurate methodology determination of pulmonary bacterial infections in exhaled air. As a pulmonary bacteria were cultured and their headspace analyzed for the amount of excreted VOCs to select those compounds which are exclusively associated with specific microorganisms. Development of a rapid, methodology for identification of bacterial species may improve antibiotic therapy, ultimately leading to controlling the antibiotic problem. Two hundred bacterial headspace samples from four different microorganisms (Escherichia coli, Pseudomonas aeruginosa, Staphylococcus and Klebsiella pneumoniae) were analyzed by gas chromatography-mass to detect a wide array of VOCs. Statistical analysis of these volatiles the characterization of specific VOC profiles indicative for each Differences in VOC abundance between the bacterial types were determined ANalysis of VAriance-principal component analysis (ANOVA-PCA). These were visualized with PCA. Cross validation was applied to validate the We identified a large number of different compounds in the various thus demonstrating a highly significant difference in VOC occurrence of cultures compared to the medium and between the cultures themselves. Additionally, a separation between a methicillin-resistant and a methicillin-sensitive isolate of S. aureus could be made due to differences between compounds. ANOVA-PCA analysis showed that 25 VOCs differently profiled across the various microorganisms, whereas a PCA enabled the visualization of these clear differences between the We demonstrated that identification of the studied microorganisms, antibiotic susceptible and resistant S. aureus substrain, is possible selected number of compounds measured in the headspace of these in vitro results may translate into a breath analysis approach that has potential to be used as a diagnostic tool in medical microbiology.

AB - The identification of specific volatile organic compounds (VOCs) microorganisms may assist in developing a fast and accurate methodology determination of pulmonary bacterial infections in exhaled air. As a pulmonary bacteria were cultured and their headspace analyzed for the amount of excreted VOCs to select those compounds which are exclusively associated with specific microorganisms. Development of a rapid, methodology for identification of bacterial species may improve antibiotic therapy, ultimately leading to controlling the antibiotic problem. Two hundred bacterial headspace samples from four different microorganisms (Escherichia coli, Pseudomonas aeruginosa, Staphylococcus and Klebsiella pneumoniae) were analyzed by gas chromatography-mass to detect a wide array of VOCs. Statistical analysis of these volatiles the characterization of specific VOC profiles indicative for each Differences in VOC abundance between the bacterial types were determined ANalysis of VAriance-principal component analysis (ANOVA-PCA). These were visualized with PCA. Cross validation was applied to validate the We identified a large number of different compounds in the various thus demonstrating a highly significant difference in VOC occurrence of cultures compared to the medium and between the cultures themselves. Additionally, a separation between a methicillin-resistant and a methicillin-sensitive isolate of S. aureus could be made due to differences between compounds. ANOVA-PCA analysis showed that 25 VOCs differently profiled across the various microorganisms, whereas a PCA enabled the visualization of these clear differences between the We demonstrated that identification of the studied microorganisms, antibiotic susceptible and resistant S. aureus substrain, is possible selected number of compounds measured in the headspace of these in vitro results may translate into a breath analysis approach that has potential to be used as a diagnostic tool in medical microbiology.

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DO - 10.1088/1752-7155/8/2/027106

M3 - Article

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JO - Journal of Breath Research

JF - Journal of Breath Research

SN - 1752-7155

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