Federated learning enables big data for rare cancer boundary detection

Sarthak Pati, Ujjwal Baid, Brandon Edwards, Micah Sheller, G. Anthony Reina, Spyridon Bakas*, Shih-Han Wang, Patrick Foley, Alexey Gruzdev, Deepthi Karkada, Christos Davatzikos, Chiharu Sako, Satyam Ghodasara, Michel Bilello, Suyash Mohan, Philipp Vollmuth, Gianluca Brugnara, Chandrakanth J. Preetha, Felix Sahm, Klaus Maier-HeinMaximilian Zenk, Martin Bendszus, Wolfgang Wick, Evan Calabrese, Jeffrey Rudie, Javier Villanueva-Meyer, Soonmee Cha, Madhura Ingalhalikar, Manali Jadhav, Umang Pandey, Jitender Saini, John Garrett, Matthew Larson, Robert Jeraj, Stuart Currie, Russell Frood, Kavi Fatania, Raymond Y. Huang, Ken Chang, Carmen Balana, Jaume Capellades, Josep Puig, Johannes Trenkler, Josef Pichler, Georg Necker, Andreas Haunschmidt, Stephan Meckel, Gaurav Shukla, Spencer Liem, Gregory S. Alexander, Regina G. H. Beets-Tan, Et al.

*Corresponding author for this work

Research output: Contribution to journalArticleAcademicpeer-review

Abstract

Although machine learning (ML) has shown promise across disciplines, out-of-sample generalizability is concerning. This is currently addressed by sharing multi-site data, but such centralization is challenging/infeasible to scale due to various limitations. Federated ML (FL) provides an alternative paradigm for accurate and generalizable ML, by only sharing numericalmodel updates. Here we present the largest FL study to-date, involving data from 71 sites across 6 continents, to generate an automatic tumor boundary detector for the rare disease of glioblastoma, reporting the largest such dataset in the literature (n = 6, 314). We demonstrate a 33% delineation improvement for the surgically targetable tumor, and 23% for the complete tumor extent, over a publicly trained model. We anticipate our study to: 1) enable more healthcare studies informed by large diverse data, ensuring meaningful results for rare diseases and underrepresented populations, 2) facilitate further analyses for glioblastoma by releasing our consensus model, and 3) demonstrate the FL effectiveness at such scale and task-complexity as a paradigm shift for multisite collaborations, alleviating the need for data-sharing.
Original languageEnglish
Article number7346
Number of pages17
JournalNature Communications
Volume13
Issue number1
DOIs
Publication statusPublished - 5 Dec 2022

Keywords

  • CENTRAL-NERVOUS-SYSTEM
  • BRAIN
  • PERFORMANCE
  • ATLAS
  • MRI
  • SEGMENTATION
  • SURVIVAL
  • CLASSIFICATION
  • BEVACIZUMAB
  • VALIDATION

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