BridgeDb 3.0.4

Christian Y. Brenninkmeijer; Egon Willighagen; Manas Awasthi; Stian Soiland-Reyes; Anders Riutta; Alexander Pico; Ian Dunlop; Randy Kerber; Alasdair Gray; Marvin Martens; Jonathan Mélius; Martina Summer-Kutmon; Friederike (Freddie) Ehrhart

doi:10.5281/zenodo.4719243

BridgeDb 3.0.4

Christian Y. Brenninkmeijer, Egon Willighagen^* (Contact), Manas Awasthi, Stian Soiland-Reyes, Anders Riutta, Alexander Pico, Ian Dunlop, Randy Kerber, Alasdair Gray, Marvin Martens, Jonathan Mélius, Martina Summer-Kutmon, Friederike (Freddie) Ehrhart

^*Corresponding author for this work

Research output: Non-textual / digital / web - outputs › Software › Academic

Abstract

First public release of BridgeDb 3.0, a major version upgrade. It includes all the many small updates in the 2.3 seriese, but also introduces new features: support for secondary identifiers (identifiers that are not removed or deleted yet, but which have a better identifier), compact identifier support, no longer has the main copy of datasources.tsv, updates the versions of many dependencies, and a tool for create VoID header files. Java 8 and 11 are supported

Original language	English
Publisher	Zenodo
Media of output	Online
Size	11.1 MB
DOIs	https://doi.org/10.5281/zenodo.4719243
Publication status	Published - 26 Apr 2021

Keywords

biology
identifier
application programming interface
ELIXIR
ELIXIR-NL
interoperability

Access to Document

10.5281/zenodo.4719243Licence: Other

Cite this

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title = "BridgeDb 3.0.4",

abstract = "First public release of BridgeDb 3.0, a major version upgrade. It includes all the many small updates in the 2.3 seriese, but also introduces new features: support for secondary identifiers (identifiers that are not removed or deleted yet, but which have a better identifier), compact identifier support, no longer has the main copy of datasources.tsv, updates the versions of many dependencies, and a tool for create VoID header files. Java 8 and 11 are supported",

keywords = "biology, identifier, application programming interface, ELIXIR, ELIXIR-NL, interoperability",

author = "Brenninkmeijer, {Christian Y.} and Egon Willighagen and Manas Awasthi and Stian Soiland-Reyes and Anders Riutta and Alexander Pico and Ian Dunlop and Randy Kerber and Alasdair Gray and Marvin Martens and Jonathan M{\'e}lius and Martina Summer-Kutmon and Ehrhart, {Friederike (Freddie)}",

year = "2021",

month = apr,

day = "26",

doi = "10.5281/zenodo.4719243",

language = "English",

publisher = "Zenodo",

address = "Switzerland",

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AU - Brenninkmeijer, Christian Y.

AU - Awasthi, Manas

AU - Soiland-Reyes, Stian

AU - Riutta, Anders

AU - Pico, Alexander

AU - Dunlop, Ian

AU - Kerber, Randy

AU - Gray, Alasdair

AU - Martens, Marvin

AU - Mélius, Jonathan

AU - Summer-Kutmon, Martina

AU - Ehrhart, Friederike (Freddie)

A2 - Willighagen, Egon

PY - 2021/4/26

Y1 - 2021/4/26

N2 - First public release of BridgeDb 3.0, a major version upgrade. It includes all the many small updates in the 2.3 seriese, but also introduces new features: support for secondary identifiers (identifiers that are not removed or deleted yet, but which have a better identifier), compact identifier support, no longer has the main copy of datasources.tsv, updates the versions of many dependencies, and a tool for create VoID header files. Java 8 and 11 are supported

AB - First public release of BridgeDb 3.0, a major version upgrade. It includes all the many small updates in the 2.3 seriese, but also introduces new features: support for secondary identifiers (identifiers that are not removed or deleted yet, but which have a better identifier), compact identifier support, no longer has the main copy of datasources.tsv, updates the versions of many dependencies, and a tool for create VoID header files. Java 8 and 11 are supported

KW - biology

KW - identifier

KW - application programming interface

KW - ELIXIR

KW - ELIXIR-NL

KW - interoperability

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DO - 10.5281/zenodo.4719243

M3 - Software

PB - Zenodo

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