Michel Dumontier

Michel Dumontier

Distinguished Professor

 https://orcid.org/0000-0003-4727-9435
1998 …2024

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  • Vec2SPARQL: Integrating SPARQL queries and knowledge graph embeddings

    Kulmanov, M., Kafkas, S., Karwath, A., Malic, A., Gkoutos, G. V., Dumontier, M. & Hoehndorf, R., 1 Jan 2018, Semantic Web Applications and Tools for Health Care and Life Sciences. Vol. 2275. (CEUR Workshop Proceedings).

    Research output: Chapter in Book/Report/Conference proceeding › Conference article in proceeding › Academic › peer-review

  • Using the Personal Health Train for Automated and Privacy-Preserving Analytics on Vertically Partitioned Data

    van Soest, J., Sun, C., Mussmann, O., Puts, M., van den Berg, B., Malic, A., van Oppen, C., Townend, D., Dekker, A. & Dumontier, M., 2018, BUILDING CONTINENTS OF KNOWLEDGE IN OCEANS OF DATA: THE FUTURE OF CO-CREATED EHEALTH. IOS Press, Vol. 247. p. 581-585 5 p. (Studies in Health Technology and Informatics, Vol. 247).

    Research output: Chapter in Book/Report/Conference proceeding › Conference article in proceeding › Academic › peer-review

  • User-friendly Composition of FAIR Workflows in a Notebook Environment.

    Richardson, R. A., Celebi, R., Burg, S. V. D., Smits, D., Ridder, L., Dumontier, M. & Kuhn, T., 2021, Proceedings of the 11th on Knowledge Capture Conference (K-CAP '21). Association for Computing Machinery, p. 1-8 8 p.

    Research output: Chapter in Book/Report/Conference proceeding › Conference article in proceeding › Academic › peer-review

    Open Access

  • Trusty URIs: Verifiable, immutable, and permanent digital artifacts for linked data

    Kuhn, T. & Dumontier, M., 16 Jan 2014, The Semantic Web: Trends and Challenges: 11th International Conference, ESWC 2014, Anissaras, Crete, Greece, May 25-29, 2014. Proceedings. Springer, Cham, p. 395-410 16 p. (Lecture Notes in Computer Science, Vol. 8465).

    Research output: Chapter in Book/Report/Conference proceeding › Conference article in proceeding › Academic › peer-review

    Open Access
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    70 Downloads (Pure)

  • Transformation and integration of heterogeneous health data in a privacy-preserving distributed learning infrastructure

    Sun, C., Emonet, V., van Soest, J., Koster, A., Dekker, A. & Dumontier, M., 1 Jan 2019, Semantic Web Applications and Tools for Health Care and Life Sciences. Vol. 2849. p. 141-142 2 p. (CEUR Workshop Proceedings).

    Research output: Chapter in Book/Report/Conference proceeding › Conference article in proceeding › Academic › peer-review

    Open Access
    File
    8 Downloads (Pure)

  • The smartAPI ecosystem for making Web APIs FAIR

    Dastgheib, S., Whetzel, T., Zaveri, A., Afrasiabe, C., Assis, P., Availlach, P., Jagodnik, K., Korodi, G., Pilarczyk, M., De Pons, J., Schürer, S., Terryn, R., Verborgh, R., Wu, C. & Dumontier, M., 2017, The smartAPI ecosystem for making web APIs FAIR. Vol. 1931. p. 1-4 4 p.

    Research output: Chapter in Book/Report/Conference proceeding › Conference article in proceeding › Academic › peer-review

    Open Access
    File
    33 Downloads (Pure)

  • smartAPI: Towards a more intelligent network of Web APIs

    Zaveri, A., Dastgheib, S., Whetzel, T., Verborgh, R., Avillach, P., Korodi, G., Terryn, R., Jagodnik, K. M., Assis, P., Wu, C. & Dumontier, M., 1 May 2017, Proceedings of the 14th ESWC. Blomqvist, E., Maynard, D., Gangemi, A., Hoekstra, R., Hitzler, P. & Hartig, O. (eds.). Springer, Vol. 10250. p. 154-169 16 p. (Lecture Notes in Computer Science).

    Research output: Chapter in Book/Report/Conference proceeding › Conference article in proceeding › Academic › peer-review

  • Similarity and relevance of court decisions: A computational study on CJEU cases

    Moodley, K., Hernández Serrano, P., van Dijck, G. & Dumontier, M., Dec 2019, Legal knowledge and information systems. Araszkiewicz, M. & Rodríguez-Doncel, V. (eds.). Amsterdam/Berlin/Washington, DC: IOS Press, p. 63-72 10 p. (Frontiers in Artificial Intelligence and Applications, Vol. 322).

    Research output: Chapter in Book/Report/Conference proceeding › Conference article in proceeding › Academic › peer-review

    Open Access
    File
    218 Downloads (Pure)

  • Semantic query answering with time-series graphs

    Ferres, L., Dumontier, M. & Villanueva-Rosales, N., 2007, 2007 Eleventh International IEEE EDOC Conference Workshop. IEEE

    Research output: Chapter in Book/Report/Conference proceeding › Conference article in proceeding › Academic › peer-review

  • Semantic Correlation Graph Embedding

    Wang, W. W., Han, Y. C., Bromuri, S. & Dumontier, M., 2022, 2022 IEEE INTERNATIONAL CONFERENCE ON FUZZY SYSTEMS (FUZZ-IEEE). IEEE, 10 p. (IEEE International Fuzzy Systems Conference Proceedings).

    Research output: Chapter in Book/Report/Conference proceeding › Conference article in proceeding › Academic › peer-review

  • Semantic annotation and question answering of statistical graphs

    Dumontier, M., Ferres, L. & Villanueva-Rosales, N., 2008, MICAI 2008: Advances in Artificial Intelligence: 7th Mexican International Conference on Artificial Intelligence, Atizapán de Zaragoza, Mexico, October 27-31, 2008 Proceedings. Springer, p. 100-110 11 p. (Lecture Notes in Computer Science, Vol. 5317).

    Research output: Chapter in Book/Report/Conference proceeding › Conference article in proceeding › Academic › peer-review

  • Semantically-Informed Deep Neural Networks For Sound Recognition

    Esposito, M., Valente, G., Plasencia-Calaña, Y., Dumontier, M., Giordano, B. L. & Formisano, E., 5 May 2023, ICASSP 2023 - 2023 IEEE International Conference on Acoustics, Speech and Signal Processing, Proceedings. IEEE, (ICASSP, IEEE International Conference on Acoustics, Speech and Signal Processing - Proceedings, Vol. 2023-June).

    Research output: Chapter in Book/Report/Conference proceeding › Conference article in proceeding › Academic › peer-review

    Open Access
    File
    7 Downloads (Pure)

  • Reuse of design pattern measurements for health data

    Queralt-Rosinach, N., Wilkinson, M., Kaliyaperumal, R., Bernabé, C. H., Long, Q., Dumontier, M., Schofield, P. N. & Roos, M., 1 Jan 2021, Joint Ontology Workshops 2021 Episode VII: The Bolzano Summer of Knowledge, JOWO 2021. Vol. 2969. 172257. (CEUR Workshop Proceedings).

    Research output: Chapter in Book/Report/Conference proceeding › Conference article in proceeding › Academic › peer-review

    Open Access

  • Report on semantic web for health care and life sciences workshop

    Chen, H., Cheung, K., Dumontier, M., Prud'hommeaux, E., Ruttenberg, A., Stephens, S. & Wang, Y., 2008, Proceedings of the 17th International Conference on World Wide Web 2008, WWW'08. Association for Computing Machinery (ACM), p. 1273-1274 2 p. (Proceeding of the 17th International Conference on World Wide Web 2008, WWW'08).

    Research output: Chapter in Book/Report/Conference proceeding › Conference article in proceeding › Academic › peer-review

  • Realism for scientific ontologies

    Dumontier, M. & Hoehndorf, R., 2010, Formal Ontology in Information Systems: Proceedings of the Sixth International Conference (FOIS 2010) . Galton, A. & Mizoguchi, R. (eds.). The Association for Computing Machinery, p. 387-399 13 p. (Frontiers in Artificial Intelligence and Applications, Vol. 209).

    Research output: Chapter in Book/Report/Conference proceeding › Conference article in proceeding › Academic › peer-review

  • Quality Assessment of Biomedical Metadata Using Topic Modeling

    Zaveri, A., Dumontier, M. & Nayak, S., 2018, Quality Assessment of Biomedical Metadata Using Topic Modeling. .

    Research output: Chapter in Book/Report/Conference proceeding › Conference article in proceeding › Academic › peer-review

    Open Access

  • Publishing without publishers: A decentralized approach to dissemination, retrieval, and archiving of data

    Kuhn, T., Chichester, C., Krauthammer, M. & Dumontier, M., 2015, The Semantic Web - ISWC 2015: 14th International Semantic Web Conference, Bethlehem, PA, USA, October 11-15, 2015, Proceedings, Part I. Springer, Cham, Vol. 2. p. 656-672 17 p. (Lecture Notes in Computer Science, Vol. 9366). (Information Systems and Applications, incl. Internet/Web, and HCI, Vol. 9366).

    Research output: Chapter in Book/Report/Conference proceeding › Conference article in proceeding › Academic › peer-review

    Open Access

  • Provenance-centered dataset of drug-drug interactions

    Banda, J. M., Kuhn, T., Shah, N. H. & Dumontier, M., 2015, The Semantic Web - ISWC 2015: 14th International Semantic Web Conference, Bethlehem, PA, USA, October 11-15, 2015, Proceedings, Part II. Springer, Cham, Vol. 2. p. 293-300 8 p. (Lecture Notes in Computer Science, Vol. 9367). (Information Systems and Applications, incl. Internet/Web, and HCI, Vol. 9367).

    Research output: Chapter in Book/Report/Conference proceeding › Conference article in proceeding › Academic › peer-review

  • Ontology Mapping for Life Science Linked Data

    Zaveri, A. & Dumontier, M., 2016, Proceedings of the First International Workshop on Biomedical Data Integration and Discovery (BMDID 2016). p. 1-6

    Research output: Chapter in Book/Report/Conference proceeding › Conference article in proceeding › Academic

  • On the Combination of Event Calculus and Empirical Semantic Drifts

    Krause, F., Yan, X., Darnala, B. & Dumontier, M., 1 Jan 2023, CEUR Workshop Proceedings: Joint of the 20th European Semantic Web Conference - Workshops and Tutorials, ESWC-JP 2023. Vol. 3443. (CEUR Workshop Proceedings).

    Research output: Chapter in Book/Report/Conference proceeding › Conference article in proceeding › Academic › peer-review

    Open Access
    File
    10 Downloads (Pure)

  • Network ranking assisted semantic data mining

    Kralj, J., Vavpetič, A., Dumontier, M. & Lavrač, N., 2016, Bioinformatics and Biomedical Engineering: 4th International Conference, IWBBIO 2016, Granada, Spain, April 20-22, 2016, Proceedings. Springer, p. 752-764 13 p. (Lecture Notes in Computer Science, Vol. 9656).

    Research output: Chapter in Book/Report/Conference proceeding › Conference article in proceeding › Academic › peer-review

  • Nanotate: Semantically Annotating Experimental Protocols with Nanopublications

    Giraldo, O., Ruano, M., Richardson, R. A., Celebi, R., Dumontier, M. & Kuhn, T., 2022, Workshop proceedings of the 13th International Conference on Semantic Web Applications and Tools for Health Care and Life Sciences. CEUR Workshop Proceedings, Vol. 3127. p. 64-73

    Research output: Chapter in Book/Report/Conference proceeding › Conference article in proceeding › Academic › peer-review

    Open Access

  • Nanopublications: A Growing Resource of Provenance-Centric Scientific Linked Data

    Kuhn, T., Meroño-Peñuela, A., Malic, A., Poelen, J. H., Hurlbert, A. H., Ortiz, E. C., Furlong, L. I., Queralt-Rosinach, N., Chichester, C., Banda, J. M., Willighagen, E., Ehrhart, F., Evelo, C., Malas, T. B. & Dumontier, M., 18 Sept 2018, 2018 IEEE 14th International Conference on e-Science (e-Science). IEEE, p. 83-92 10 p. (Proceeding IEEE International Conference on e-Science (e-Science)).

    Research output: Chapter in Book/Report/Conference proceeding › Conference article in proceeding › Academic

    Open Access

  • Modeling tryptic digestion on the Cell BE processor

    Green, J. R., Mahmoud, H. & Dumontier, M., 2009, 2009 Canadian Conference on Electrical and Computer Engineering: "From Electrons to Oceans: Innovation at Many Scales," May 3-6, 2009, Newfoundland & Labrador, Canada. IEEE, p. 701-705 5 p. (Canadian Conference on Electrical and Computer Engineering).

    Research output: Chapter in Book/Report/Conference proceeding › Conference article in proceeding › Academic › peer-review

  • Machine Learning based Drug Indication Prediction using Linked Open Data

    Celebi, R., Erten, O. & Dumontier, M., 2017, 10th International Conference on Semantic Web Applications and Tools for Health Care and Life Sciences.

    Research output: Chapter in Book/Report/Conference proceeding › Conference article in proceeding › Academic › peer-review

    Open Access
    File
    29 Downloads (Pure)

  • Is Crowdsourcing Patient-Reported Outcomes the Future of Evidence-Based Medicine? A Case Study of Back Pain

    Peleg, M., Leung, T. I., Desai, M. & Dumontier, M., 2017, ARTIFICIAL INTELLIGENCE IN MEDICINE, AIME 2017. Springer International Publishing AG, Vol. 10259. p. 245-255 11 p. (Lecture Notes in Artificial Intelligence, Vol. 10259).

    Research output: Chapter in Book/Report/Conference proceeding › Conference article in proceeding › Academic › peer-review

    Open Access
    File
    40 Downloads (Pure)

  • Generating Knowledge Graph Based Explanations for Drug Repurposing Predictions

    Ozkan, E., Celebi, R., Yilmaz, A., Emonet, V. & Dumontier, M., 1 Jan 2023, Semantic Web Applications and Tools for Health Care and Life Sciences. Vol. 3415. p. 22-31 10 p. (CEUR Workshop Proceedings).

    Research output: Chapter in Book/Report/Conference proceeding › Conference article in proceeding › Academic › peer-review

    Open Access

  • FAIR Principles for Clinical Practice Guidelines in a Learning Health System

    Leung, T. I. & Dumontier, M., 21 Aug 2019, MEDINFO 2019: Health and Wellbeing e-Networks for All. Ohno-Machado, L. & Séroussi, B. (eds.). IOS Press, p. 1690-1691 2 p. (Studies in Health Technology and Informatics, Vol. 264).

    Research output: Chapter in Book/Report/Conference proceeding › Conference article in proceeding › Academic › peer-review

    Open Access

  • Evaluating scientific hypotheses using the SPARQL inferencing notation

    Callahan, A. & Dumontier, M., 2012, The Semantic Web: Research and Applications: 9th Extended Semantic Web Conference, ESWC 2012, Heraklion, Crete, Greece, May 27-31, 2012. Proceedings. Springer, p. 647-658 12 p. (Lecture Notes in Computer Science, Vol. 7295).

    Research output: Chapter in Book/Report/Conference proceeding › Conference article in proceeding › Academic › peer-review

    Open Access

  • Data2Services: enabling automated conversion of data to services

    Emonet, V., Zaveri, A., Malic, A., Grigoriu, A. & Dumontier, M., Dec 2018, SWAT4LS.

    Research output: Chapter in Book/Report/Conference proceeding › Conference article in proceeding › Academic › peer-review

    Open Access
    File
    63 Downloads (Pure)

  • CrowdED: Guideline for Optimal Crowdsourcing Experimental Design

    Zaveri, A., Serrano, P. H., Desai, M. & Dumontier, M., 2018, Companion Proceedings of the The Web Conference 2018. Republic and Canton of Geneva, Switzerland: International World Wide Web Conferences Steering Committee, p. 1109-1116 8 p. (WWW '18).

    Research output: Chapter in Book/Report/Conference proceeding › Conference article in proceeding › Academic › peer-review

    Open Access
    File
    101 Downloads (Pure)

  • Chemical knowledge for the semantic web

    Konyk, M., Leon, AS. & Dumontier, M., 2008, Data Integration in the Life Sciences: 5th International Workshop, DILS 2008, Evry, France, June 25-27, 2008. Proceedings. Springer, p. 169-176 8 p. (Lecture Notes in Computer Science, Vol. 5109).

    Research output: Chapter in Book/Report/Conference proceeding › Conference article in proceeding › Academic › peer-review

  • Bioschemas: schema.org for the Life Sciences

    Garcia, L., Giraldo, O., Garcia, A. & Dumontier, M., 1 Jan 2017, Semantic Web Applications and Tools for Health Care and Life Sciences. Vol. 2042. 1333374. (CEUR Workshop Proceedings).

    Research output: Chapter in Book/Report/Conference proceeding › Conference article in proceeding › Academic › peer-review

    Open Access
    File
    3 Downloads (Pure)

  • Bio2RDF release 2: Improved coverage, interoperability and provenance of life science linked data

    Callahan, A., Cruz-Toledo, J., Ansell, P. & Dumontier, M., 2013, The Semantic Web: Semantics and Big Data: 10th International Conference, ESWC 2013, Montpellier, France, May 26-30, 2013. Proceedings. Springer, p. 200-212 13 p. (Lecture Notes in Computer Science, Vol. 7882).

    Research output: Chapter in Book/Report/Conference proceeding › Conference article in proceeding › Academic › peer-review

    Open Access

  • A stochastic particle-based biological system simulator

    Boulianne, L., Dumontier, M. & Gross, W. J., 2007, SCSC '07: Proceedings of the 2007 Summer Computer Simulation Conference. Society for Computer Simulation, p. 794-801 8 p.

    Research output: Chapter in Book/Report/Conference proceeding › Conference article in proceeding › Academic › peer-review

  • Annotation of existing databases using Semantic Web technologies: Making data more FAIR

    van Soest, J., Choudhury, A., Gaikwad, N., Sloep, M., Dumontier, M. & Dekker, A., 1 Jan 2019, Semantic Web Applications and Tools for Health Care and Life Sciences. Vol. 2849. p. 94-101 8 p. (CEUR Workshop Proceedings).

    Research output: Chapter in Book/Report/Conference proceeding › Conference article in proceeding › Academic › peer-review

    Open Access
    File
    4 Downloads (Pure)

  • Analyze Decentralized Personal Health Data using Solid, Digital Consent, and Federated Learning

    Sun, C., van Soest, J. & Dumontier, M., 1 Jan 2023, Semantic Web Applications and Tools for Health Care and Life Sciences 2023. Vol. 3415. p. 169-170 2 p. (CEUR Workshop Proceedings).

    Research output: Chapter in Book/Report/Conference proceeding › Conference article in proceeding › Academic › peer-review

    Open Access
    File
    36 Downloads (Pure)

  • A model for capturing provenance of assertions about chemical substances

    Moodley, K., Zaveri, A., Wu, C. & Dumontier, M., 2018, Semantic Web Applications and Tools for Health Care and Life Sciences. Baker, C. J. O., Waagmeester, A., Splendiani, A., Beyan, O. D. & Marshall, M. S. (eds.). Antwerp, Belgium: CEUR-WS.org, Vol. 2275.

    Research output: Chapter in Book/Report/Conference proceeding › Conference article in proceeding › Academic › peer-review

    Open Access

  • A linked data representation for summary statistics and grouping criteria

    McCusker, J. P., Dumontier, M., Chari, S., Luciano, J. S. & McGuinness, D. L., 1 Jan 2019, Computer Vision Winter Workshop 2023. Vol. 2549. 159435. (CEUR Workshop Proceedings).

    Research output: Chapter in Book/Report/Conference proceeding › Conference article in proceeding › Academic › peer-review

    Open Access
    File
    14 Downloads (Pure)

  • A comprehensive comparison of automated FAIRness Evaluation Tools

    Sun, C., Emonet, V. & Dumontier, M., 1 Jan 2022, Semantic Web Applications and Tools for Health Care and Life Sciences. Vol. 3127. p. 44-53 10 p. (CEUR Workshop Proceedings).

    Research output: Chapter in Book/Report/Conference proceeding › Conference article in proceeding › Academic › peer-review

    Open Access
    File
    89 Downloads (Pure)

  • ACES: Evaluating Automated Audio Captioning Models on the Semantics of Sounds

    Wijngaard, G., Formisano, E., Giordano, B. L. & Dumontier, M., 1 Jan 2023, 31st European Signal Processing Conference, EUSIPCO 2023 - Proceedings. IEEE, p. 770-774 5 p. (European Signal Processing Conference).

    Research output: Chapter in Book/Report/Conference proceeding › Conference article in proceeding › Academic › peer-review

  • Abusive Language on Social Media Through the Legal Looking Glass

    Costa Bertaglia, T., Grigoriu, A., Dumontier, M. & van Dijck, G., Jun 2021, WOAH 2021: THE 5TH WORKSHOP ON ONLINE ABUSE AND HARMS. Association for Computational Linguistics, p. 191-200 10 p.

    Research output: Chapter in Book/Report/Conference proceeding › Conference article in proceeding › Academic › peer-review

    Open Access