Research output

WikiPathways: capturing the full diversity of pathway knowledge

Research output: Contribution to journalArticleAcademicpeer-review

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WikiPathways: capturing the full diversity of pathway knowledge. / Kutmon, M.; Riutta, A.; Nunes, N.; Hanspers, K.; Willighagen, E.L.; Bohler, A.; Melius, J.; Waagmeester, Andra; Sinha, S.R.; Miller, Ryan; Coort, S.L.; Cirillo, E.; Smeets, B.; Evelo, C.T.; Pico, A.R.

In: Nucleic Acids Research, Vol. 44, No. D1, 04.01.2016, p. D488-D494.

Research output: Contribution to journalArticleAcademicpeer-review

Harvard

Kutmon, M, Riutta, A, Nunes, N, Hanspers, K, Willighagen, EL, Bohler, A, Melius, J, Waagmeester, A, Sinha, SR, Miller, R, Coort, SL, Cirillo, E, Smeets, B, Evelo, CT & Pico, AR 2016, 'WikiPathways: capturing the full diversity of pathway knowledge', Nucleic Acids Research, vol. 44, no. D1, pp. D488-D494. https://doi.org/10.1093/nar/gkv1024

APA

Vancouver

Author

Kutmon, M. ; Riutta, A. ; Nunes, N. ; Hanspers, K. ; Willighagen, E.L. ; Bohler, A. ; Melius, J. ; Waagmeester, Andra ; Sinha, S.R. ; Miller, Ryan ; Coort, S.L. ; Cirillo, E. ; Smeets, B. ; Evelo, C.T. ; Pico, A.R. / WikiPathways: capturing the full diversity of pathway knowledge. In: Nucleic Acids Research. 2016 ; Vol. 44, No. D1. pp. D488-D494.

Bibtex

@article{231f850e376a452fb58789e3a54c3b9b,
title = "WikiPathways: capturing the full diversity of pathway knowledge",
abstract = "WikiPathways (http://www.wikipathways.org) is an open, collaborative platform for capturing and disseminating models of biological pathways for data visualization and analysis. Since our last NAR update, 4 years ago, WikiPathways has experienced massive growth in content, which continues to be contributed by hundreds of individuals each year. New aspects of the diversity and depth of the collected pathways are described from the perspective of researchers interested in using pathway information in their studies. We provide updates on extensions and services to support pathway analysis and visualization via popular standalone tools, i.e. PathVisio and Cytoscape, web applications and common programming environments. We introduce the Quick Edit feature for pathway authors and curators, in addition to new means of publishing pathways and maintaining custom pathway collections to serve specific research topics and communities. In addition to the latest milestones in our pathway collection and curation effort, we also highlight the latest means to access the content as publishable figures, as standard data files, and as linked data, including bulk and programmatic access.",
keywords = "EXPRESSION",
author = "M. Kutmon and A. Riutta and N. Nunes and K. Hanspers and E.L. Willighagen and A. Bohler and J. Melius and Andra Waagmeester and S.R. Sinha and Ryan Miller and S.L. Coort and E. Cirillo and B. Smeets and C.T. Evelo and A.R. Pico",
year = "2016",
month = "1",
day = "4",
doi = "10.1093/nar/gkv1024",
language = "English",
volume = "44",
pages = "D488--D494",
journal = "Nucleic Acids Research",
issn = "0305-1048",
publisher = "Oxford University Press",
number = "D1",

}

RIS

TY - JOUR

T1 - WikiPathways: capturing the full diversity of pathway knowledge

AU - Kutmon, M.

AU - Riutta, A.

AU - Nunes, N.

AU - Hanspers, K.

AU - Willighagen, E.L.

AU - Bohler, A.

AU - Melius, J.

AU - Waagmeester, Andra

AU - Sinha, S.R.

AU - Miller, Ryan

AU - Coort, S.L.

AU - Cirillo, E.

AU - Smeets, B.

AU - Evelo, C.T.

AU - Pico, A.R.

PY - 2016/1/4

Y1 - 2016/1/4

N2 - WikiPathways (http://www.wikipathways.org) is an open, collaborative platform for capturing and disseminating models of biological pathways for data visualization and analysis. Since our last NAR update, 4 years ago, WikiPathways has experienced massive growth in content, which continues to be contributed by hundreds of individuals each year. New aspects of the diversity and depth of the collected pathways are described from the perspective of researchers interested in using pathway information in their studies. We provide updates on extensions and services to support pathway analysis and visualization via popular standalone tools, i.e. PathVisio and Cytoscape, web applications and common programming environments. We introduce the Quick Edit feature for pathway authors and curators, in addition to new means of publishing pathways and maintaining custom pathway collections to serve specific research topics and communities. In addition to the latest milestones in our pathway collection and curation effort, we also highlight the latest means to access the content as publishable figures, as standard data files, and as linked data, including bulk and programmatic access.

AB - WikiPathways (http://www.wikipathways.org) is an open, collaborative platform for capturing and disseminating models of biological pathways for data visualization and analysis. Since our last NAR update, 4 years ago, WikiPathways has experienced massive growth in content, which continues to be contributed by hundreds of individuals each year. New aspects of the diversity and depth of the collected pathways are described from the perspective of researchers interested in using pathway information in their studies. We provide updates on extensions and services to support pathway analysis and visualization via popular standalone tools, i.e. PathVisio and Cytoscape, web applications and common programming environments. We introduce the Quick Edit feature for pathway authors and curators, in addition to new means of publishing pathways and maintaining custom pathway collections to serve specific research topics and communities. In addition to the latest milestones in our pathway collection and curation effort, we also highlight the latest means to access the content as publishable figures, as standard data files, and as linked data, including bulk and programmatic access.

KW - EXPRESSION

U2 - 10.1093/nar/gkv1024

DO - 10.1093/nar/gkv1024

M3 - Article

VL - 44

SP - D488-D494

JO - Nucleic Acids Research

T2 - Nucleic Acids Research

JF - Nucleic Acids Research

SN - 0305-1048

IS - D1

ER -