cyNeo4j: connecting Neo4j and Cytoscape

Georg Summer; Thomas Kelder; Keiichiro Ono; Marijana Radonjic; Stephane Heymans; Barry Demchak

doi:10.1093/bioinformatics/btv460

cyNeo4j: connecting Neo4j and Cytoscape

Georg Summer^*, Thomas Kelder, Keiichiro Ono, Marijana Radonjic, Stephane Heymans, Barry Demchak

^*Corresponding author for this work

Research output: Contribution to journal › Article › Academic › peer-review

Abstract

The Summary: We developed cyNeo4j, a Cytoscape App to link Cytoscape and Neo4j databases to utilize the performance and storage capacities Neo4j offers. We implemented a Neo4j NetworkAnalyzer, ForceAtlas2 layout and Cypher component to demonstrate the possibilities a distributed setup of Cytoscape and Neo4j have.

Original language	English
Pages (from-to)	3868-3869
Journal	Bioinformatics
Volume	31
Issue number	23
DOIs	https://doi.org/10.1093/bioinformatics/btv460
Publication status	Published - 1 Dec 2015

Access to Document

10.1093/bioinformatics/btv460Licence: CC BY

Cite this

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title = "cyNeo4j: connecting Neo4j and Cytoscape",

abstract = "The Summary: We developed cyNeo4j, a Cytoscape App to link Cytoscape and Neo4j databases to utilize the performance and storage capacities Neo4j offers. We implemented a Neo4j NetworkAnalyzer, ForceAtlas2 layout and Cypher component to demonstrate the possibilities a distributed setup of Cytoscape and Neo4j have.",

author = "Georg Summer and Thomas Kelder and Keiichiro Ono and Marijana Radonjic and Stephane Heymans and Barry Demchak",

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AU - Summer, Georg

AU - Kelder, Thomas

AU - Ono, Keiichiro

AU - Radonjic, Marijana

AU - Heymans, Stephane

AU - Demchak, Barry

PY - 2015/12/1

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AB - The Summary: We developed cyNeo4j, a Cytoscape App to link Cytoscape and Neo4j databases to utilize the performance and storage capacities Neo4j offers. We implemented a Neo4j NetworkAnalyzer, ForceAtlas2 layout and Cypher component to demonstrate the possibilities a distributed setup of Cytoscape and Neo4j have.

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DO - 10.1093/bioinformatics/btv460

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EP - 3869

JO - Bioinformatics

JF - Bioinformatics

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