The haplotypes of various TNF related genes associated with scleritis in Chinese Han

Yingnan Gao, Liping Du, Fuzhen Li, Jiadong Ding, Geng Li, Qingfeng Cao, Na Li, Guannan Su, Aize Kijlstra, Peizeng Yang*

*Corresponding author for this work

Research output: Contribution to journalArticleAcademicpeer-review

2 Citations (Web of Science)

Abstract

BackgroundSeveral studies have stated that TNF-alpha participates in the pathogenesis of scleritis, but also in several systemic autoimmune diseases and vasculitis, of which some are associated with scleritis. Earlier GWAS and SNP studies have confirmed that multiple SNPs of TNF related genes are associated with many immune-mediated disorders. The purpose of this study was to examine the association of TNF related gene polymorphisms with scleritis in Chinese Han. A case-control study was carried out in 556 non-infectious scleritis cases and 742 normal controls. A total of 28 single-nucleotide polymorphisms (SNPs) were genotyped by the iPLEXGold genotyping assay.ResultsNo significant correlations were seen between the individual SNPs in the TNF related genes and scleritis. Haplotype analysis showed a significantly decreased frequency of a TNFAIP3 TGT haplotype (order of SNPs: rs9494885, rs3799491, rs2230926) (Pc = 0.021, OR = 0.717, 95% CI = 0.563-0.913) and a significantly increased frequency of a TNFSF4 GT haplotype (order of SNPs: rs3850641, rs704840) (Pc = 0.004, OR = 1.691, 95% CI = 1.205-2.372) and TNFSF15 CCC haplotype (order of SNPs: rs6478106, rs3810936, rs7865494) (Pc = 0.012, OR = 1.662, 95% CI = 1.168-2.363) in patients with scleritis as compared with healthy volunteers.ConclusionsThis study reveals that a TGT haplotype in TNFAIP3 may be a protective factor for the development of scleritis and that a GT haplotype in TNFSF4 and a CCC haplotype in TNFSF15 may be risk factors for scleritis in Chinese Han.

Original languageEnglish
Article number46
Number of pages9
JournalHuman Genomics
Volume14
Issue number1
DOIs
Publication statusPublished - 7 Dec 2020

Keywords

  • Scleritis
  • TNF related genes
  • Haplotype
  • Gene polymorphism
  • A case-control study
  • SYSTEMIC-LUPUS-ERYTHEMATOSUS
  • CYTOKINE 1A TL1A
  • RHEUMATOID-ARTHRITIS
  • POLYMORPHISMS
  • TNFAIP3
  • SUSCEPTIBILITY
  • RISK
  • DISEASE
  • THERAPY
  • 6Q23

Cite this