The concordance between RNA-seq and microarray data depends on chemical treatment and transcript abundance

Charles Wang; Binsheng Gong; Pierre R. Bushel; Jean Thierry-Mieg; Danielle Thierry-Mieg; Joshua Xu; Hong Fang; Huixiao Hong; Jie Shen; Zhenqiang Su; Joe Meehan; Xiaojin Li; Lu Yang; Haiqing Li; Pawel P. Labaj; David P. Kreil; Dalila Megherbi; Stan Gaj; Florian Caiment; Joost van Delft; Jos Kleinjans; Andreas Scherer; Viswanath Devanarayan; Jian Wang; Yong Yang; Hui-Rong Qian; Lee J. Lancashire; Marina Bessarabova; Yuri Nikolsky; Cesare Furlanello; Marco Chierici; Davide Albanese; Giuseppe Jurman; Samantha Riccadonna; Michele Filosi; Roberto Visintainer; Ke K. Zhang; Jainying Li; Jui-Hua Hsieh; Daniel L. Svoboda; James C. Fuscoe; Youping Deng; Leming Shi; Richard S. Paules; Scott S. Auerbach; Weida Tong

doi:10.1038/nbt.3001

The concordance between RNA-seq and microarray data depends on chemical treatment and transcript abundance

Charles Wang, Binsheng Gong, Pierre R. Bushel, Jean Thierry-Mieg, Danielle Thierry-Mieg, Joshua Xu, Hong Fang, Huixiao Hong, Jie Shen, Zhenqiang Su, Joe Meehan, Xiaojin Li, Lu Yang, Haiqing Li, Pawel P. Labaj, David P. Kreil, Dalila Megherbi, Stan Gaj, Florian Caiment, Joost van DelftJos Kleinjans, Andreas Scherer, Viswanath Devanarayan, Jian Wang, Yong Yang, Hui-Rong Qian, Lee J. Lancashire, Marina Bessarabova, Yuri Nikolsky, Cesare Furlanello, Marco Chierici, Davide Albanese, Giuseppe Jurman, Samantha Riccadonna, Michele Filosi, Roberto Visintainer, Ke K. Zhang, Jainying Li, Jui-Hua Hsieh, Daniel L. Svoboda, James C. Fuscoe, Youping Deng, Leming Shi, Richard S. Paules, Scott S. Auerbach, Weida Tong^*

^*Corresponding author for this work

Research output: Contribution to journal › Article › Academic › peer-review

Original language	English
Pages (from-to)	926-932
Journal	Nature Biotechnology
Volume	32
Issue number	9
DOIs	https://doi.org/10.1038/nbt.3001
Publication status	Published - Sep 2014

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10.1038/nbt.3001

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Wang, C., Gong, B., Bushel, P. R., Thierry-Mieg, J., Thierry-Mieg, D., Xu, J., Fang, H., Hong, H., Shen, J., Su, Z., Meehan, J., Li, X., Yang, L., Li, H., Labaj, P. P., Kreil, D. P., Megherbi, D., Gaj, S., Caiment, F., ... Tong, W. (2014). The concordance between RNA-seq and microarray data depends on chemical treatment and transcript abundance. Nature Biotechnology, 32(9), 926-932. https://doi.org/10.1038/nbt.3001

Wang, Charles ; Gong, Binsheng ; Bushel, Pierre R. ; Thierry-Mieg, Jean ; Thierry-Mieg, Danielle ; Xu, Joshua ; Fang, Hong ; Hong, Huixiao ; Shen, Jie ; Su, Zhenqiang ; Meehan, Joe ; Li, Xiaojin ; Yang, Lu ; Li, Haiqing ; Labaj, Pawel P. ; Kreil, David P. ; Megherbi, Dalila ; Gaj, Stan ; Caiment, Florian ; van Delft, Joost ; Kleinjans, Jos ; Scherer, Andreas ; Devanarayan, Viswanath ; Wang, Jian ; Yang, Yong ; Qian, Hui-Rong ; Lancashire, Lee J. ; Bessarabova, Marina ; Nikolsky, Yuri ; Furlanello, Cesare ; Chierici, Marco ; Albanese, Davide ; Jurman, Giuseppe ; Riccadonna, Samantha ; Filosi, Michele ; Visintainer, Roberto ; Zhang, Ke K. ; Li, Jainying ; Hsieh, Jui-Hua ; Svoboda, Daniel L. ; Fuscoe, James C. ; Deng, Youping ; Shi, Leming ; Paules, Richard S. ; Auerbach, Scott S. ; Tong, Weida. / The concordance between RNA-seq and microarray data depends on chemical treatment and transcript abundance. In: Nature Biotechnology. 2014 ; Vol. 32, No. 9. pp. 926-932.

@article{1740627983234730bb0e3d25e9a975a3,

title = "The concordance between RNA-seq and microarray data depends on chemical treatment and transcript abundance",

author = "Charles Wang and Binsheng Gong and Bushel, {Pierre R.} and Jean Thierry-Mieg and Danielle Thierry-Mieg and Joshua Xu and Hong Fang and Huixiao Hong and Jie Shen and Zhenqiang Su and Joe Meehan and Xiaojin Li and Lu Yang and Haiqing Li and Labaj, {Pawel P.} and Kreil, {David P.} and Dalila Megherbi and Stan Gaj and Florian Caiment and {van Delft}, Joost and Jos Kleinjans and Andreas Scherer and Viswanath Devanarayan and Jian Wang and Yong Yang and Hui-Rong Qian and Lancashire, {Lee J.} and Marina Bessarabova and Yuri Nikolsky and Cesare Furlanello and Marco Chierici and Davide Albanese and Giuseppe Jurman and Samantha Riccadonna and Michele Filosi and Roberto Visintainer and Zhang, {Ke K.} and Jainying Li and Jui-Hua Hsieh and Svoboda, {Daniel L.} and Fuscoe, {James C.} and Youping Deng and Leming Shi and Paules, {Richard S.} and Auerbach, {Scott S.} and Weida Tong",

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month = sep,

doi = "10.1038/nbt.3001",

language = "English",

volume = "32",

pages = "926--932",

journal = "Nature Biotechnology",

issn = "1087-0156",

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Wang, C, Gong, B, Bushel, PR, Thierry-Mieg, J, Thierry-Mieg, D, Xu, J, Fang, H, Hong, H, Shen, J, Su, Z, Meehan, J, Li, X, Yang, L, Li, H, Labaj, PP, Kreil, DP, Megherbi, D, Gaj, S, Caiment, F, van Delft, J, Kleinjans, J, Scherer, A, Devanarayan, V, Wang, J, Yang, Y, Qian, H-R, Lancashire, LJ, Bessarabova, M, Nikolsky, Y, Furlanello, C, Chierici, M, Albanese, D, Jurman, G, Riccadonna, S, Filosi, M, Visintainer, R, Zhang, KK, Li, J, Hsieh, J-H, Svoboda, DL, Fuscoe, JC, Deng, Y, Shi, L, Paules, RS, Auerbach, SS & Tong, W 2014, 'The concordance between RNA-seq and microarray data depends on chemical treatment and transcript abundance', Nature Biotechnology, vol. 32, no. 9, pp. 926-932. https://doi.org/10.1038/nbt.3001

The concordance between RNA-seq and microarray data depends on chemical treatment and transcript abundance. / Wang, Charles; Gong, Binsheng; Bushel, Pierre R.; Thierry-Mieg, Jean; Thierry-Mieg, Danielle; Xu, Joshua; Fang, Hong; Hong, Huixiao; Shen, Jie; Su, Zhenqiang; Meehan, Joe; Li, Xiaojin; Yang, Lu; Li, Haiqing; Labaj, Pawel P.; Kreil, David P.; Megherbi, Dalila; Gaj, Stan; Caiment, Florian; van Delft, Joost; Kleinjans, Jos; Scherer, Andreas; Devanarayan, Viswanath; Wang, Jian; Yang, Yong; Qian, Hui-Rong; Lancashire, Lee J.; Bessarabova, Marina; Nikolsky, Yuri; Furlanello, Cesare; Chierici, Marco; Albanese, Davide; Jurman, Giuseppe; Riccadonna, Samantha; Filosi, Michele; Visintainer, Roberto; Zhang, Ke K.; Li, Jainying; Hsieh, Jui-Hua; Svoboda, Daniel L.; Fuscoe, James C.; Deng, Youping; Shi, Leming; Paules, Richard S.; Auerbach, Scott S.; Tong, Weida.

In: Nature Biotechnology, Vol. 32, No. 9, 09.2014, p. 926-932.

Research output: Contribution to journal › Article › Academic › peer-review

TY - JOUR

T1 - The concordance between RNA-seq and microarray data depends on chemical treatment and transcript abundance

AU - Wang, Charles

AU - Gong, Binsheng

AU - Bushel, Pierre R.

AU - Thierry-Mieg, Jean

AU - Thierry-Mieg, Danielle

AU - Xu, Joshua

AU - Fang, Hong

AU - Hong, Huixiao

AU - Shen, Jie

AU - Su, Zhenqiang

AU - Meehan, Joe

AU - Li, Xiaojin

AU - Yang, Lu

AU - Li, Haiqing

AU - Labaj, Pawel P.

AU - Kreil, David P.

AU - Megherbi, Dalila

AU - Gaj, Stan

AU - Caiment, Florian

AU - van Delft, Joost

AU - Kleinjans, Jos

AU - Scherer, Andreas

AU - Devanarayan, Viswanath

AU - Wang, Jian

AU - Yang, Yong

AU - Qian, Hui-Rong

AU - Lancashire, Lee J.

AU - Bessarabova, Marina

AU - Nikolsky, Yuri

AU - Furlanello, Cesare

AU - Chierici, Marco

AU - Albanese, Davide

AU - Jurman, Giuseppe

AU - Riccadonna, Samantha

AU - Filosi, Michele

AU - Visintainer, Roberto

AU - Zhang, Ke K.

AU - Li, Jainying

AU - Hsieh, Jui-Hua

AU - Svoboda, Daniel L.

AU - Fuscoe, James C.

AU - Deng, Youping

AU - Shi, Leming

AU - Paules, Richard S.

AU - Auerbach, Scott S.

AU - Tong, Weida

PY - 2014/9

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U2 - 10.1038/nbt.3001

DO - 10.1038/nbt.3001

M3 - Article

VL - 32

SP - 926

EP - 932

JO - Nature Biotechnology

JF - Nature Biotechnology

SN - 1087-0156

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ER -