The agreement problem for unrooted phylogenetic trees is FPT

Celine Scornavacca, Leo van Iersel, Steven Kelk, David Bryant

Research output: Contribution to journalArticleAcademicpeer-review

Abstract

A collection T of k unrooted phylogenetic trees on different leaf sets is said to be strictly compatible or in agreement if there exists a tree T such that each tree in T can be obtained from T by deleting leaves and suppressing degree-2 vertices. The problem of determining if a set of unrooted trees is in agreement has been proved NP-hard in 1992. Here, we show that an f(k).n algorithm exists, for some computable function f of k, proving that strict compatibility of unrooted phylogenetic trees is fixed-parameter tractable with respect to the number k of trees. Designing a practical FPT algorithm remains an open problem.

Original languageEnglish
Pages (from-to)385-392
Number of pages8
JournalJournal of Graph Algorithms and Applications
Volume18
Issue number3
DOIs
Publication statusPublished - 2014

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