SADI for GMOD: Semantic web services for model organism databases

  • Ben Vandervalk
  • , M. Dumontier
  • , E Luke McCarthy
  • , Mark D. Wilkinson

Research output: Contribution to journalConference article in journalAcademicpeer-review

Abstract

Here we describe work-in-progress on the SADI for GMOD project (SADI: Semantic Automated Discovery and Integration; GMOD: Generic Model Organism Database), a distribution of ready-made Web services that will bring additional model organism data onto the Seman- tic Web. SADI is a lightweight standard for implementing Web services that natively consume and generate RDF, while GMOD is a widely-used toolkit for building model organism databases (e.g. FlyBase, Parameci- umDB). The SADI for GMOD services will provide a novel mechanism for analyzing data across GMOD sites, as well as other bioinformatics resources that publish their data using SADI.

Original languageEnglish
Pages (from-to)70-75
Number of pages6
JournalCEUR Workshop Proceedings
Volume774
Publication statusPublished - 2011
Externally publishedYes

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