Mining biological pathways using WikiPathways web services.

T.A. Kelder; A.R. Pico; K. Hanspers; M.P. van Iersel; C.T.A. Evelo; B.R. Conklin

doi:10.1371/journal.pone.0006447

Mining biological pathways using WikiPathways web services.

T.A. Kelder^*
, A.R. Pico
, K. Hanspers
, M.P. van Iersel
, C.T.A. Evelo
, B.R. Conklin

^*Corresponding author for this work

Research output: Contribution to journal › Article › Academic › peer-review

Abstract

WikiPathways is a platform for creating, updating, and sharing biological pathways [1]. Pathways can be edited and downloaded using the wiki-style website. Here we present a SOAP web service that provides programmatic access to WikiPathways that is complementary to the website. We describe the functionality that this web service offers and discuss several use cases in detail. Exposing WikiPathways through a web service opens up new ways of utilizing pathway information and assisting the community curation process.

Original language	English
Article number	e6447
Journal	PLOS ONE
Volume	4
Issue number	7
DOIs	https://doi.org/10.1371/journal.pone.0006447
Publication status	Published - 1 Jan 2009

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10.1371/journal.pone.0006447Licence: CC BY

Cite this

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AU - Hanspers, K.

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AU - Evelo, C.T.A.

AU - Conklin, B.R.

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AB - WikiPathways is a platform for creating, updating, and sharing biological pathways [1]. Pathways can be edited and downloaded using the wiki-style website. Here we present a SOAP web service that provides programmatic access to WikiPathways that is complementary to the website. We describe the functionality that this web service offers and discuss several use cases in detail. Exposing WikiPathways through a web service opens up new ways of utilizing pathway information and assisting the community curation process.

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Mining biological pathways using WikiPathways web services.

Abstract

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