Minimum Information about a Cardiac Electrophysiology Experiment (MICEE): Standardised reporting for model reproducibility, interoperability, and data sharing

T Alexander Quinn; S. Granite; M. A. Allessie; Charles Antzelevitch; C. Bollensdorff; G. Bub; Rebecca A. B. Burton; E. Cerbai; P. S. Chen; M. Delmar; Dario DiFrancesco; Y. E. Earm; I. R. Efimov; M. Egger; E. Entcheva; M.P. Fink; Rodolphe Fischmeister; M. R. Franz; A. Garny; W. R. Giles; T. Hannes; S. E. Harding; P. J. Hunter; G. Iribe; J. Jalife; Randall C. Johnson; R S. Kass; Itsuo Kodama; G. Koren; Phillip Lord; V. S. Markhasin; S. Matsuoka; A. D. McCulloch; Gary R. Mirams; G. E. Morley; Stanley Nattel; D. Noble; S. P. Olesen; A. V. Panfilov; N. A. Trayanova; Ursula Ravens; Stephane Richard; D. S. Rosenbaum; Y. Rudy; F. Sachs; F. B. Sachse; David A. Saint; U. Schotten; O. Solovyova; P. Taggart; L. Tung; Andras Varro; P. G. Volders; Ke Wang; J. N. Weiss; E. Wettwer; Emily White; Ronald Wilders; R. L. Winslow; Peter Kohl

doi:10.1016/j.pbiomolbio.2011.07.001

Minimum Information about a Cardiac Electrophysiology Experiment (MICEE): Standardised reporting for model reproducibility, interoperability, and data sharing

T Alexander Quinn^*, S. Granite, M. A. Allessie, Charles Antzelevitch, C. Bollensdorff, G. Bub, Rebecca A. B. Burton, E. Cerbai, P. S. Chen, M. Delmar, Dario DiFrancesco, Y. E. Earm, I. R. Efimov, M. Egger, E. Entcheva, M.P. Fink, Rodolphe Fischmeister, M. R. Franz, A. Garny, W. R. GilesT. Hannes, S. E. Harding, P. J. Hunter, G. Iribe, J. Jalife, Randall C. Johnson, R S. Kass, Itsuo Kodama, G. Koren, Phillip Lord, V. S. Markhasin, S. Matsuoka, A. D. McCulloch, Gary R. Mirams, G. E. Morley, Stanley Nattel, D. Noble, S. P. Olesen, A. V. Panfilov, N. A. Trayanova, Ursula Ravens, Stephane Richard, D. S. Rosenbaum, Y. Rudy, F. Sachs, F. B. Sachse, David A. Saint, U. Schotten, O. Solovyova, P. Taggart, L. Tung, Andras Varro, P. G. Volders, Ke Wang, J. N. Weiss, E. Wettwer, Emily White, Ronald Wilders, R. L. Winslow, Peter Kohl

^*Corresponding author for this work

Research output: Contribution to journal › Article › Academic › peer-review

Abstract

Cardiac experimental electrophysiology is in need of a well-defined Minimum Information Standard for recording, annotating, and reporting experimental data. As a step towards establishing this, we present a draft standard, called Minimum Information about a Cardiac Electrophysiology Experiment (MICEE). The ultimate goal is to develop a useful tool for cardiac electrophysiologists which facilitates and improves dissemination of the minimum information necessary for reproduction of cardiac electrophysiology research, allowing for easier comparison and utilisation of findings by others. It is hoped that this will enhance the integration of individual results into experimental, computational, and conceptual models. In its present form, this draft is intended for assessment and development by the research community. We invite the reader to join this effort, and, if deemed productive, implement the Minimum Information about a Cardiac Electrophysiology Experiment standard in their own work.

Original language	English
Pages (from-to)	4-10
Journal	Progress in Biophysics & Molecular Biology
Volume	107
Issue number	1
DOIs	https://doi.org/10.1016/j.pbiomolbio.2011.07.001
Publication status	Published - Oct 2011

Keywords

Minimum Information Standard
Cardiac electrophysiology
Data sharing
Reproducibility
Integration
Computational modelling

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10.1016/j.pbiomolbio.2011.07.001Licence: CC BY-NC-ND

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Quinn, T. A., Granite, S., Allessie, M. A., Antzelevitch, C., Bollensdorff, C., Bub, G., Burton, R. A. B., Cerbai, E., Chen, P. S., Delmar, M., DiFrancesco, D., Earm, Y. E., Efimov, I. R., Egger, M., Entcheva, E., Fink, M. P., Fischmeister, R., Franz, M. R., Garny, A., ... Kohl, P. (2011). Minimum Information about a Cardiac Electrophysiology Experiment (MICEE): Standardised reporting for model reproducibility, interoperability, and data sharing. Progress in Biophysics & Molecular Biology, 107(1), 4-10. https://doi.org/10.1016/j.pbiomolbio.2011.07.001

@article{8147864292e947b9be5cf5579d8fa7c3,

title = "Minimum Information about a Cardiac Electrophysiology Experiment (MICEE): Standardised reporting for model reproducibility, interoperability, and data sharing",

abstract = "Cardiac experimental electrophysiology is in need of a well-defined Minimum Information Standard for recording, annotating, and reporting experimental data. As a step towards establishing this, we present a draft standard, called Minimum Information about a Cardiac Electrophysiology Experiment (MICEE). The ultimate goal is to develop a useful tool for cardiac electrophysiologists which facilitates and improves dissemination of the minimum information necessary for reproduction of cardiac electrophysiology research, allowing for easier comparison and utilisation of findings by others. It is hoped that this will enhance the integration of individual results into experimental, computational, and conceptual models. In its present form, this draft is intended for assessment and development by the research community. We invite the reader to join this effort, and, if deemed productive, implement the Minimum Information about a Cardiac Electrophysiology Experiment standard in their own work. ",

keywords = "Minimum Information Standard, Cardiac electrophysiology, Data sharing, Reproducibility, Integration, Computational modelling",

author = "Quinn, {T Alexander} and S. Granite and Allessie, {M. A.} and Charles Antzelevitch and C. Bollensdorff and G. Bub and Burton, {Rebecca A. B.} and E. Cerbai and Chen, {P. S.} and M. Delmar and Dario DiFrancesco and Earm, {Y. E.} and Efimov, {I. R.} and M. Egger and E. Entcheva and M.P. Fink and Rodolphe Fischmeister and Franz, {M. R.} and A. Garny and Giles, {W. R.} and T. Hannes and Harding, {S. E.} and Hunter, {P. J.} and G. Iribe and J. Jalife and Johnson, {Randall C.} and Kass, {R S.} and Itsuo Kodama and G. Koren and Phillip Lord and Markhasin, {V. S.} and S. Matsuoka and McCulloch, {A. D.} and Mirams, {Gary R.} and Morley, {G. E.} and Stanley Nattel and D. Noble and Olesen, {S. P.} and Panfilov, {A. V.} and Trayanova, {N. A.} and Ursula Ravens and Stephane Richard and Rosenbaum, {D. S.} and Y. Rudy and F. Sachs and Sachse, {F. B.} and Saint, {David A.} and U. Schotten and O. Solovyova and P. Taggart and L. Tung and Andras Varro and Volders, {P. G.} and Ke Wang and Weiss, {J. N.} and E. Wettwer and Emily White and Ronald Wilders and Winslow, {R. L.} and Peter Kohl",

year = "2011",

month = oct,

doi = "10.1016/j.pbiomolbio.2011.07.001",

language = "English",

volume = "107",

pages = "4--10",

journal = "Progress in Biophysics & Molecular Biology",

issn = "0079-6107",

publisher = "Elsevier Ltd",

number = "1",

}

Quinn, TA, Granite, S, Allessie, MA, Antzelevitch, C, Bollensdorff, C, Bub, G, Burton, RAB, Cerbai, E, Chen, PS, Delmar, M, DiFrancesco, D, Earm, YE, Efimov, IR, Egger, M, Entcheva, E, Fink, MP, Fischmeister, R, Franz, MR, Garny, A, Giles, WR, Hannes, T, Harding, SE, Hunter, PJ, Iribe, G, Jalife, J, Johnson, RC, Kass, RS, Kodama, I, Koren, G, Lord, P, Markhasin, VS, Matsuoka, S, McCulloch, AD, Mirams, GR, Morley, GE, Nattel, S, Noble, D, Olesen, SP, Panfilov, AV, Trayanova, NA, Ravens, U, Richard, S, Rosenbaum, DS, Rudy, Y, Sachs, F, Sachse, FB, Saint, DA, Schotten, U, Solovyova, O, Taggart, P, Tung, L, Varro, A, Volders, PG, Wang, K, Weiss, JN, Wettwer, E, White, E, Wilders, R, Winslow, RL & Kohl, P 2011, 'Minimum Information about a Cardiac Electrophysiology Experiment (MICEE): Standardised reporting for model reproducibility, interoperability, and data sharing', Progress in Biophysics & Molecular Biology, vol. 107, no. 1, pp. 4-10. https://doi.org/10.1016/j.pbiomolbio.2011.07.001

Minimum Information about a Cardiac Electrophysiology Experiment (MICEE): Standardised reporting for model reproducibility, interoperability, and data sharing. / Quinn, T Alexander; Granite, S.; Allessie, M. A. et al.
In: Progress in Biophysics & Molecular Biology, Vol. 107, No. 1, 10.2011, p. 4-10.

Research output: Contribution to journal › Article › Academic › peer-review

TY - JOUR

T1 - Minimum Information about a Cardiac Electrophysiology Experiment (MICEE): Standardised reporting for model reproducibility, interoperability, and data sharing

AU - Quinn, T Alexander

AU - Granite, S.

AU - Allessie, M. A.

AU - Antzelevitch, Charles

AU - Bollensdorff, C.

AU - Bub, G.

AU - Burton, Rebecca A. B.

AU - Cerbai, E.

AU - Chen, P. S.

AU - Delmar, M.

AU - DiFrancesco, Dario

AU - Earm, Y. E.

AU - Efimov, I. R.

AU - Egger, M.

AU - Entcheva, E.

AU - Fink, M.P.

AU - Fischmeister, Rodolphe

AU - Franz, M. R.

AU - Garny, A.

AU - Giles, W. R.

AU - Hannes, T.

AU - Harding, S. E.

AU - Hunter, P. J.

AU - Iribe, G.

AU - Jalife, J.

AU - Johnson, Randall C.

AU - Kass, R S.

AU - Kodama, Itsuo

AU - Koren, G.

AU - Lord, Phillip

AU - Markhasin, V. S.

AU - Matsuoka, S.

AU - McCulloch, A. D.

AU - Mirams, Gary R.

AU - Morley, G. E.

AU - Nattel, Stanley

AU - Noble, D.

AU - Olesen, S. P.

AU - Panfilov, A. V.

AU - Trayanova, N. A.

AU - Ravens, Ursula

AU - Richard, Stephane

AU - Rosenbaum, D. S.

AU - Rudy, Y.

AU - Sachs, F.

AU - Sachse, F. B.

AU - Saint, David A.

AU - Schotten, U.

AU - Solovyova, O.

AU - Taggart, P.

AU - Tung, L.

AU - Varro, Andras

AU - Volders, P. G.

AU - Wang, Ke

AU - Weiss, J. N.

AU - Wettwer, E.

AU - White, Emily

AU - Wilders, Ronald

AU - Winslow, R. L.

AU - Kohl, Peter

PY - 2011/10

Y1 - 2011/10

N2 - Cardiac experimental electrophysiology is in need of a well-defined Minimum Information Standard for recording, annotating, and reporting experimental data. As a step towards establishing this, we present a draft standard, called Minimum Information about a Cardiac Electrophysiology Experiment (MICEE). The ultimate goal is to develop a useful tool for cardiac electrophysiologists which facilitates and improves dissemination of the minimum information necessary for reproduction of cardiac electrophysiology research, allowing for easier comparison and utilisation of findings by others. It is hoped that this will enhance the integration of individual results into experimental, computational, and conceptual models. In its present form, this draft is intended for assessment and development by the research community. We invite the reader to join this effort, and, if deemed productive, implement the Minimum Information about a Cardiac Electrophysiology Experiment standard in their own work.

AB - Cardiac experimental electrophysiology is in need of a well-defined Minimum Information Standard for recording, annotating, and reporting experimental data. As a step towards establishing this, we present a draft standard, called Minimum Information about a Cardiac Electrophysiology Experiment (MICEE). The ultimate goal is to develop a useful tool for cardiac electrophysiologists which facilitates and improves dissemination of the minimum information necessary for reproduction of cardiac electrophysiology research, allowing for easier comparison and utilisation of findings by others. It is hoped that this will enhance the integration of individual results into experimental, computational, and conceptual models. In its present form, this draft is intended for assessment and development by the research community. We invite the reader to join this effort, and, if deemed productive, implement the Minimum Information about a Cardiac Electrophysiology Experiment standard in their own work.

KW - Minimum Information Standard

KW - Cardiac electrophysiology

KW - Data sharing

KW - Reproducibility

KW - Integration

KW - Computational modelling

U2 - 10.1016/j.pbiomolbio.2011.07.001

DO - 10.1016/j.pbiomolbio.2011.07.001

M3 - Article

SN - 0079-6107

VL - 107

SP - 4

EP - 10

JO - Progress in Biophysics & Molecular Biology

JF - Progress in Biophysics & Molecular Biology

IS - 1

ER -

Minimum Information about a Cardiac Electrophysiology Experiment (MICEE): Standardised reporting for model reproducibility, interoperability, and data sharing

Abstract

Keywords

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