Managing food and microbiome studies data using Fairspace, a flexible and FAIR data management platform

Ewelina Grudzien; Eelke van der Horst; Frank van den Bergh; Maria H. Traka; Duncan Ng; Falk Hildebrand; Chris T. Evelo; Susan L.M. Coort; Duygu Dede Sener; Elisa Cirillo

Managing food and microbiome studies data using Fairspace, a flexible and FAIR data management platform

Ewelina Grudzien, Eelke van der Horst, Frank van den Bergh, Maria H. Traka, Duncan Ng, Falk Hildebrand, Chris T. Evelo, Susan L.M. Coort, Duygu Dede Sener, Elisa Cirillo

NUTRIM - Metabolic Health

Research output: Chapter in Book/Report/Conference proceeding › Conference article in proceeding › Academic › peer-review

Abstract

Fairspace is an open-source research data management platform that adheres to the FAIR principles. The Hyve created Fairspace in 2016 and has developed it ever since, customizing it for several organizations' use cases. We present the implementation of this tool within the FNS-Cloud consortium, in which Fairspace became the user browser that allows microbiome and food data exploration within public resources mapped to a common (meta)data model and vocabularies/ontologies.

Original language	English
Title of host publication	Semantic Web Applications and Tools for Health Care and Life Sciences
Editors	Atsuko Yamaguchi, Andrea Splendiani, M. Scott Marshall, Chris Baker, Jerven Bolleman, Albert Burger, Leyla Jael Castro, Ole Eigenbrod, Sabine Österle, Martin Romacker, Andra Waagmeester
Publisher	CEUR Workshop Proceedings
Pages	171-172
Number of pages	2
Volume	3415
Publication status	Published - 1 Jan 2023
Event	14th International Conference on Semantic Web Applications and Tools for Health Care and Life Sciences - Basel, Switzerland Duration: 13 Feb 2023 → 16 Feb 2023 Conference number: 14

Publication series

Series	CEUR Workshop Proceedings
ISSN	1613-0073

Conference

Conference	14th International Conference on Semantic Web Applications and Tools for Health Care and Life Sciences
Abbreviated title	SWAT4HCLS 2023
Country/Territory	Switzerland
City	Basel
Period	13/02/23 → 16/02/23

Keywords

FAIR
Fairspace
Food & Nutrition Security
Microbiome
Research Data Management

Access to Document

https://ceur-ws.org/Vol-3415/paper-44.pdfLicence: CC BY

Cite this

Grudzien, E., van der Horst, E., van den Bergh, F., Traka, M. H., Ng, D., Hildebrand, F., Evelo, C. T., Coort, S. L. M., Sener, D. D., & Cirillo, E. (2023). Managing food and microbiome studies data using Fairspace, a flexible and FAIR data management platform. In A. Yamaguchi, A. Splendiani, M. S. Marshall, C. Baker, J. Bolleman, A. Burger, L. J. Castro, O. Eigenbrod, S. Österle, M. Romacker, & A. Waagmeester (Eds.), Semantic Web Applications and Tools for Health Care and Life Sciences (Vol. 3415, pp. 171-172). CEUR Workshop Proceedings. https://ceur-ws.org/Vol-3415/paper-44.pdf

Grudzien, Ewelina ; van der Horst, Eelke ; van den Bergh, Frank et al. / Managing food and microbiome studies data using Fairspace, a flexible and FAIR data management platform. Semantic Web Applications and Tools for Health Care and Life Sciences. editor / Atsuko Yamaguchi ; Andrea Splendiani ; M. Scott Marshall ; Chris Baker ; Jerven Bolleman ; Albert Burger ; Leyla Jael Castro ; Ole Eigenbrod ; Sabine Österle ; Martin Romacker ; Andra Waagmeester. Vol. 3415 CEUR Workshop Proceedings, 2023. pp. 171-172 (CEUR Workshop Proceedings).

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abstract = "Fairspace is an open-source research data management platform that adheres to the FAIR principles. The Hyve created Fairspace in 2016 and has developed it ever since, customizing it for several organizations' use cases. We present the implementation of this tool within the FNS-Cloud consortium, in which Fairspace became the user browser that allows microbiome and food data exploration within public resources mapped to a common (meta)data model and vocabularies/ontologies.",

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author = "Ewelina Grudzien and {van der Horst}, Eelke and {van den Bergh}, Frank and Traka, {Maria H.} and Duncan Ng and Falk Hildebrand and Evelo, {Chris T.} and Coort, {Susan L.M.} and Sener, {Duygu Dede} and Elisa Cirillo",

note = "Funding Information: Food Nutrition Security Cloud (FNS-Cloud) has received funding from the European Union{\textquoteright}s Horizon 2020 Research and Innovation programme (H2020-EU.3.2.2.3. – A sustainable and competitive agri-food industry) under Grant Agreement No. 863059 – www.fns-cloud.eu We thank all the other partners of FNS-Cloud that have contributed to discussions and collateral work related to the Microbiome Demonstrator usecase: Institut Jozef Stefan, University of Florence, Premotec, and ScaleFocus. Funding Information: Food Nutrition Security Cloud (FNS-Cloud) has received funding from the European Union's Horizon 2020 Research and Innovation programme (H2020-EU.3.2.2.3. - A sustainable and competitive agri-food industry) under Grant Agreement No. 863059 - www.fns-cloud.eu We thank all the other partners of FNS-Cloud that have contributed to discussions and collateral work related to the Microbiome Demonstrator usecase: Institut Jozef Stefan, University of Florence, Premotec, and ScaleFocus. Publisher Copyright: {\textcopyright} 2023 Copyright for this paper by its authors. Use permitted under Creative Commons License Attribution 4.0 International (CC BY 4.0).; 14th International Conference on Semantic Web Applications and Tools for Health Care and Life Sciences, SWAT4HCLS 2023 ; Conference date: 13-02-2023 Through 16-02-2023",

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Grudzien, E, van der Horst, E, van den Bergh, F, Traka, MH, Ng, D, Hildebrand, F, Evelo, CT , Coort, SLM, Sener, DD & Cirillo, E 2023, Managing food and microbiome studies data using Fairspace, a flexible and FAIR data management platform. in A Yamaguchi, A Splendiani, MS Marshall, C Baker, J Bolleman, A Burger, LJ Castro, O Eigenbrod, S Österle, M Romacker & A Waagmeester (eds), Semantic Web Applications and Tools for Health Care and Life Sciences. vol. 3415, CEUR Workshop Proceedings, CEUR Workshop Proceedings, pp. 171-172, 14th International Conference on Semantic Web Applications and Tools for Health Care and Life Sciences, Basel, Switzerland, 13/02/23. <https://ceur-ws.org/Vol-3415/paper-44.pdf>

Managing food and microbiome studies data using Fairspace, a flexible and FAIR data management platform. / Grudzien, Ewelina; van der Horst, Eelke; van den Bergh, Frank et al.
Semantic Web Applications and Tools for Health Care and Life Sciences. ed. / Atsuko Yamaguchi; Andrea Splendiani; M. Scott Marshall; Chris Baker; Jerven Bolleman; Albert Burger; Leyla Jael Castro; Ole Eigenbrod; Sabine Österle; Martin Romacker; Andra Waagmeester. Vol. 3415 CEUR Workshop Proceedings, 2023. p. 171-172 (CEUR Workshop Proceedings).

Research output: Chapter in Book/Report/Conference proceeding › Conference article in proceeding › Academic › peer-review

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Grudzien E, van der Horst E, van den Bergh F, Traka MH, Ng D, Hildebrand F et al. Managing food and microbiome studies data using Fairspace, a flexible and FAIR data management platform. In Yamaguchi A, Splendiani A, Marshall MS, Baker C, Bolleman J, Burger A, Castro LJ, Eigenbrod O, Österle S, Romacker M, Waagmeester A, editors, Semantic Web Applications and Tools for Health Care and Life Sciences. Vol. 3415. CEUR Workshop Proceedings. 2023. p. 171-172. (CEUR Workshop Proceedings).

Managing food and microbiome studies data using Fairspace, a flexible and FAIR data management platform

Abstract

Publication series

Conference

Keywords

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