Abstract
Given a finite set X, a collection T of rooted phylogenetic trees on X and an integer k, the HYBRIDIZATION NUMBER problem asks if there exists a phylogenetic network on X that displays all trees from T and has reticulation number at most k. We show two kernelization algorithms for HYBRIDIZATION NUMBER, with kernel sizes 4k(5k)(t) and 20k(2)(Delta(+) - 1) respectively, with t the number of input trees and Delta(+) their maximum outdegree. Experiments on simulated data demonstrate the practical relevance of our kernelization algorithms. In addition, we present an n(f(k))t-time algorithm, with n = vertical bar X vertical bar and f some computable function of k.
Original language | English |
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Pages (from-to) | 1075-1089 |
Number of pages | 15 |
Journal | Journal of Computer and System Sciences |
Volume | 82 |
Issue number | 6 |
DOIs | |
Publication status | Published - 1 Sept 2016 |
Keywords
- ALGORITHMS
- EVENTS
- EVOLUTION
- Fixed-parameter tractability
- Hybridization number
- Kernelization
- MINIMUM NUMBER
- PHYLOGENETIC NETWORKS
- Phylogenetic network
- Phylogenetic tree