Interactive predictive toxicology with Bioclipse and OpenTox

E.L. Willighagen, R. Affentranger, R. Grafström, B. Hardy, N. Jeliazkova, O. Spjuth

Research output: Chapter in Book/Report/Conference proceedingChapterAcademic

Abstract

Computational predictive toxicology draws knowledge from many independent sources, providing a rich support tool to assess a wide variety of toxicological properties. A key example would be for it to complement alternative testing methods. The integration of Bioclipse and OpenTox permits toxicity prediction based on the analysis of chemical structures, and visualization of the substructure contributions to the toxicity prediction. In analogy of the decision support that is already in use in the pharmaceutical industry for designing new drug leads, we use this approach in two case studies in malaria research, using a combination of local and remote predictive models. This way, we find drug leads without predicted toxicity.

Original languageEnglish
Title of host publicationOpen source software in life science research
Subtitle of host publicationPractical solutions to common challenges in the pharmaceutical industry and beyond
EditorsL. Harland, M. Forster
PublisherTOC
ISBN (Print)978-1907568978
DOIs
Publication statusPublished - 1 Jan 2012

Publication series

SeriesWoodhead Publishing Series in Biomedicine
Number16

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