Bioclipse-R: integrating management and visualization of life science data with statistical analysis

O. Spjuth; V. Georgiev; L. Carlsson; J. Alvarsson; A. Berg; E. Willighagen; J. E. Wikberg; M. Eklund

doi:10.1093/bioinformatics/bts681

Bioclipse-R: integrating management and visualization of life science data with statistical analysis

O. Spjuth
, V. Georgiev
, L. Carlsson
, J. Alvarsson
, A. Berg
, E. Willighagen
, J. E. Wikberg
, M. Eklund^*

^*Corresponding author for this work

CARIM - Cardiovascular Research Institute Maastricht

Research output: Contribution to journal › Article › Academic › peer-review

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Abstract

SUMMARY: Bioclipse, a graphical workbench for the life sciences, provides functionality for managing and visualizing life science data. We introduce Bioclipse-R, which integrates Bioclipse and the statistical programming language R. The synergy between Bioclipse and R is demonstrated by the construction of a decision support system for anticancer drug screening and mutagenicity prediction, which shows how Bioclipse-R can be used to perform complex tasks from within a single software system. Availability and implementation: Bioclipse-R is implemented as a set of Java plug-ins for Bioclipse based on the R-package rj. Source code and binary packages are available from https://github.com/bioclipse and http://www.bioclipse.net/bioclipse-r, respectively. CONTACT: [email protected] SUPPLEMENTARY INFORMATION: Supplementary data are available at Bioinformatics online.

Original language	English
Pages (from-to)	286-289
Number of pages	4
Journal	Bioinformatics
Volume	29
Issue number	2
DOIs	https://doi.org/10.1093/bioinformatics/bts681
Publication status	Published - 1 Jan 2013

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title = "Bioclipse-R: integrating management and visualization of life science data with statistical analysis",

abstract = "SUMMARY: Bioclipse, a graphical workbench for the life sciences, provides functionality for managing and visualizing life science data. We introduce Bioclipse-R, which integrates Bioclipse and the statistical programming language R. The synergy between Bioclipse and R is demonstrated by the construction of a decision support system for anticancer drug screening and mutagenicity prediction, which shows how Bioclipse-R can be used to perform complex tasks from within a single software system. Availability and implementation: Bioclipse-R is implemented as a set of Java plug-ins for Bioclipse based on the R-package rj. Source code and binary packages are available from https://github.com/bioclipse and http://www.bioclipse.net/bioclipse-r, respectively. CONTACT: [email protected] SUPPLEMENTARY INFORMATION: Supplementary data are available at Bioinformatics online.",

author = "O. Spjuth and V. Georgiev and L. Carlsson and J. Alvarsson and A. Berg and E. Willighagen and Wikberg, \{J. E.\} and M. Eklund",

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doi = "10.1093/bioinformatics/bts681",

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AU - Spjuth, O.

AU - Georgiev, V.

AU - Carlsson, L.

AU - Alvarsson, J.

AU - Berg, A.

AU - Willighagen, E.

AU - Wikberg, J. E.

AU - Eklund, M.

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N2 - SUMMARY: Bioclipse, a graphical workbench for the life sciences, provides functionality for managing and visualizing life science data. We introduce Bioclipse-R, which integrates Bioclipse and the statistical programming language R. The synergy between Bioclipse and R is demonstrated by the construction of a decision support system for anticancer drug screening and mutagenicity prediction, which shows how Bioclipse-R can be used to perform complex tasks from within a single software system. Availability and implementation: Bioclipse-R is implemented as a set of Java plug-ins for Bioclipse based on the R-package rj. Source code and binary packages are available from https://github.com/bioclipse and http://www.bioclipse.net/bioclipse-r, respectively. CONTACT: [email protected] SUPPLEMENTARY INFORMATION: Supplementary data are available at Bioinformatics online.

AB - SUMMARY: Bioclipse, a graphical workbench for the life sciences, provides functionality for managing and visualizing life science data. We introduce Bioclipse-R, which integrates Bioclipse and the statistical programming language R. The synergy between Bioclipse and R is demonstrated by the construction of a decision support system for anticancer drug screening and mutagenicity prediction, which shows how Bioclipse-R can be used to perform complex tasks from within a single software system. Availability and implementation: Bioclipse-R is implemented as a set of Java plug-ins for Bioclipse based on the R-package rj. Source code and binary packages are available from https://github.com/bioclipse and http://www.bioclipse.net/bioclipse-r, respectively. CONTACT: [email protected] SUPPLEMENTARY INFORMATION: Supplementary data are available at Bioinformatics online.

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JO - Bioinformatics

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Bioclipse-R: integrating management and visualization of life science data with statistical analysis

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