Bioclipse-R: integrating management and visualization of life science data with statistical analysis

O. Spjuth, V. Georgiev, L. Carlsson, J. Alvarsson, A. Berg, E. Willighagen, J. E. Wikberg, M. Eklund

Research output: Contribution to journalArticleAcademicpeer-review

6 Citations (Scopus)

Abstract

SUMMARY: Bioclipse, a graphical workbench for the life sciences, provides functionality for managing and visualizing life science data. We introduce Bioclipse-R, which integrates Bioclipse and the statistical programming language R. The synergy between Bioclipse and R is demonstrated by the construction of a decision support system for anticancer drug screening and mutagenicity prediction, which shows how Bioclipse-R can be used to perform complex tasks from within a single software system. Availability and implementation: Bioclipse-R is implemented as a set of Java plug-ins for Bioclipse based on the R-package rj. Source code and binary packages are available from https://github.com/bioclipse and http://www.bioclipse.net/bioclipse-r, respectively. CONTACT: martin.eklund@farmbio.uu.se SUPPLEMENTARY INFORMATION: Supplementary data are available at Bioinformatics online.
Original languageEnglish
Pages (from-to)286-289
JournalBioinformatics
Volume29
Issue number2
DOIs
Publication statusPublished - 1 Jan 2013

Cite this

Spjuth, O., Georgiev, V., Carlsson, L., Alvarsson, J., Berg, A., Willighagen, E., Wikberg, J. E., & Eklund, M. (2013). Bioclipse-R: integrating management and visualization of life science data with statistical analysis. Bioinformatics, 29(2), 286-289. https://doi.org/10.1093/bioinformatics/bts681