Author Correction: A deep learning system accurately classifies primary and metastatic cancers using passenger mutation patterns

Wei Jiao; Gurnit Atwal; Paz Polak; Rosa Karlic; Edwin Cuppen; Fatima Al-Shahrour; Peter J. Bailey; Andrew V. Biankin; Paul C. Boutros; Peter J. Campbell; David K. Chang; Susanna L. Cooke; Vikram Deshpande; Bishoy M. Faltas; William C. Faquin; Levi Garraway; Gad Getz; Sean M. Grimmond; Syed Haider; Katherine A. Hoadley; Vera B. Kaiser; Mamoru Kato; Kirsten Kübler; Alexander J. Lazar; Constance H. Li; David N. Louis; Adam Margolin; Sancha Martin; Hardeep K. Nahal-Bose; G. Petur Nielsen; Serena Nik-Zainal; Larsson Omberg; Christine P’ng; Marc D. Perry; Esther Rheinbay; Mark A. Rubin; Colin A. Semple; Dennis C. Sgroi; Tatsuhiro Shibata; Reiner Siebert; Jaclyn Smith; Lincoln D. Stein; Miranda D. Stobbe; Ren X. Sun; Kevin Thai; Derek W. Wright; PCAWG Consortium; PCAWG Tumor Subtypes and Clinical Translation Working Group; David Townend

doi:10.1038/s41467-022-32329-6

Author Correction: A deep learning system accurately classifies primary and metastatic cancers using passenger mutation patterns

Wei Jiao, Gurnit Atwal, Paz Polak, Rosa Karlic, Edwin Cuppen, Fatima Al-Shahrour, Peter J. Bailey, Andrew V. Biankin, Paul C. Boutros, Peter J. Campbell, David K. Chang, Susanna L. Cooke, Vikram Deshpande, Bishoy M. Faltas, William C. Faquin, Levi Garraway, Gad Getz, Sean M. Grimmond, Syed Haider, Katherine A. HoadleyVera B. Kaiser, Mamoru Kato, Kirsten Kübler, Alexander J. Lazar, Constance H. Li^*, David N. Louis, Adam Margolin, Sancha Martin, Hardeep K. Nahal-Bose, G. Petur Nielsen, Serena Nik-Zainal, Larsson Omberg, Christine P’ng, Marc D. Perry, Esther Rheinbay, Mark A. Rubin, Colin A. Semple, Dennis C. Sgroi, Tatsuhiro Shibata, Reiner Siebert, Jaclyn Smith, Lincoln D. Stein^*, Miranda D. Stobbe, Ren X. Sun, Kevin Thai, Derek W. Wright, PCAWG Consortium, PCAWG Tumor Subtypes and Clinical Translation Working Group, David Townend

^*Corresponding author for this work

Research output: Contribution to journal › Erratum / corrigendum / retractions › Academic

Abstract

In the published version of this paper, the members of the Pan-Cancer Analysis of Whole Genomes (PCAWG) Consortiumwere listed in the Supplementary Information; however, these members shouldhave been included in themainpaper.The originalArticle has been corrected to include the members and affiliations of the PCAWG Consortium in the main paper; the corrections have been made to the HTML version of the Article but not the PDF version. Additional corrections to affiliations and author names have been made to the PDF and HTML versions of the original Article for consistency of information between the PCAWG list and the main paper.

Original language	English
Article number	7573
Number of pages	1
Journal	Nature Communications
Volume	13
Issue number	1
DOIs	https://doi.org/10.1038/s41467-022-32329-6
Publication status	Published - 8 Dec 2022

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2 Article

A deep learning system accurately classifies primary and metastatic cancers using passenger mutation patterns
Jiao, W., Atwal, G., Polak, P., Karlic, R., Cuppen, E., Al-Shahrour, F., Bailey, P. J., Biankin, A. V., Boutros, P. C., Campbell, P. J., Chang, D. K., Cooke, S. L., Deshpande, V., Faltas, B. M., Faquin, W. C., Garraway, L., Getz, G., Grimmond, S. M., Haider, S. & Hoadley, K. A. & 29 others, Kaiser, V. B., Kato, M., Kübler, K., Lazar, A. J., Li, C. H., Louis, D. N., Margolin, A., Martin, S., Nahal-Bose, H. K., Nielsen, G. P., Nik-Zainal, S., Omberg, L., P’ng, C., Perry, M. D., Rheinbay, E., Rubin, M. A., Semple, C. A., Sgroi, D. C., Shibata, T., Siebert, R., Smith, J., Stein, L. D., Stobbe, M. D., Sun, R. X., Thai, K., Wright, D. W., PCAWG Consortium, PCAWG Tumor Subtypes and Clinical Translation Working Group & Townend, D., 1 Dec 2020, In: Nature Communications. 11, 1, 12 p., 728.
Research output: Contribution to journal › Article › Academic › peer-review

Open Access
High-coverage whole-genome analysis of 1220 cancers reveals hundreds of genes deregulated by rearrangement-mediated cis-regulatory alterations
Zhang, Y., Chen, F., Fonseca, N. A., He, Y., Fujita, M., Nakagawa, H., Zhang, Z., Brazma, A., Amin, S. B., Awadalla, P., Bailey, P. J., Brooks, A. N., Calabrese, C., Chateigner, A., Cortés-Ciriano, I., Craft, B., Craft, D., Creighton, C. J., Davidson, N. R. & Demircioglu, D. & 31 others, Erkek, S., Frenkel-Morgenstern, M., Goldman, M. J., Greger, L., Göke, J., Hoadley, K. A., Hou, Y., Huska, M. R., Kahles, A., Khurana, E., Kilpinen, H., Korbel, J. O., Lamaze, F. C., Lehmann, K. V., Li, C., Li, S., Li, X., Li, X., Liu, D., Liu, F., Liu, X., Marin, M. G., Markowski, J., Meyerson, M., Nandi, T., Nielsen, M. M., Ojesina, A. I., PCAWG Consortium, PCAWG-Structural Variation Working Group, PCAWG Transcriptome Working Group & Townend, D., 5 Feb 2020, In: Nature Communications. 11, 1, 14 p., 736.
Research output: Contribution to journal › Article › Academic › peer-review

Open Access

Cite this

Jiao, W., Atwal, G., Polak, P., Karlic, R., Cuppen, E., Al-Shahrour, F., Bailey, P. J., Biankin, A. V., Boutros, P. C., Campbell, P. J., Chang, D. K., Cooke, S. L., Deshpande, V., Faltas, B. M., Faquin, W. C., Garraway, L., Getz, G., Grimmond, S. M., Haider, S., ... Townend, D. (2022). Author Correction: A deep learning system accurately classifies primary and metastatic cancers using passenger mutation patterns. Nature Communications, 13(1), Article 7573. https://doi.org/10.1038/s41467-022-32329-6

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title = "Author Correction: A deep learning system accurately classifies primary and metastatic cancers using passenger mutation patterns",

abstract = "In the published version of this paper, the members of the Pan-Cancer Analysis of Whole Genomes (PCAWG) Consortiumwere listed in the Supplementary Information; however, these members shouldhave been included in themainpaper.The originalArticle has been corrected to include the members and affiliations of the PCAWG Consortium in the main paper; the corrections have been made to the HTML version of the Article but not the PDF version. Additional corrections to affiliations and author names have been made to the PDF and HTML versions of the original Article for consistency of information between the PCAWG list and the main paper.",

author = "Wei Jiao and Gurnit Atwal and Paz Polak and Rosa Karlic and Edwin Cuppen and Fatima Al-Shahrour and Bailey, \{Peter J.\} and Biankin, \{Andrew V.\} and Boutros, \{Paul C.\} and Campbell, \{Peter J.\} and Chang, \{David K.\} and Cooke, \{Susanna L.\} and Vikram Deshpande and Faltas, \{Bishoy M.\} and Faquin, \{William C.\} and Levi Garraway and Gad Getz and Grimmond, \{Sean M.\} and Syed Haider and Hoadley, \{Katherine A.\} and Kaiser, \{Vera B.\} and Mamoru Kato and Kirsten K{\"u}bler and Lazar, \{Alexander J.\} and Li, \{Constance H.\} and Louis, \{David N.\} and Adam Margolin and Sancha Martin and Nahal-Bose, \{Hardeep K.\} and Nielsen, \{G. Petur\} and Serena Nik-Zainal and Larsson Omberg and Christine P{\textquoteright}ng and Perry, \{Marc D.\} and Esther Rheinbay and Rubin, \{Mark A.\} and Semple, \{Colin A.\} and Sgroi, \{Dennis C.\} and Tatsuhiro Shibata and Reiner Siebert and Jaclyn Smith and Stein, \{Lincoln D.\} and Stobbe, \{Miranda D.\} and Sun, \{Ren X.\} and Kevin Thai and Wright, \{Derek W.\} and \{PCAWG Consortium\} and \{PCAWG Tumor Subtypes and Clinical Translation Working Group\} and David Townend",

note = "Publisher Copyright: {\textcopyright} The Author(s) 2022.",

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doi = "10.1038/s41467-022-32329-6",

language = "English",

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Jiao, W, Atwal, G, Polak, P, Karlic, R, Cuppen, E, Al-Shahrour, F, Bailey, PJ, Biankin, AV, Boutros, PC, Campbell, PJ, Chang, DK, Cooke, SL, Deshpande, V, Faltas, BM, Faquin, WC, Garraway, L, Getz, G, Grimmond, SM, Haider, S, Hoadley, KA, Kaiser, VB, Kato, M, Kübler, K, Lazar, AJ, Li, CH, Louis, DN, Margolin, A, Martin, S, Nahal-Bose, HK, Nielsen, GP, Nik-Zainal, S, Omberg, L, P’ng, C, Perry, MD, Rheinbay, E, Rubin, MA, Semple, CA, Sgroi, DC, Shibata, T, Siebert, R, Smith, J, Stein, LD, Stobbe, MD, Sun, RX, Thai, K, Wright, DW, PCAWG Consortium, PCAWG Tumor Subtypes and Clinical Translation Working Group & Townend, D 2022, 'Author Correction: A deep learning system accurately classifies primary and metastatic cancers using passenger mutation patterns', Nature Communications, vol. 13, no. 1, 7573. https://doi.org/10.1038/s41467-022-32329-6

TY - JOUR

T1 - Author Correction: A deep learning system accurately classifies primary and metastatic cancers using passenger mutation patterns

AU - Jiao, Wei

AU - Atwal, Gurnit

AU - Polak, Paz

AU - Karlic, Rosa

AU - Cuppen, Edwin

AU - Al-Shahrour, Fatima

AU - Bailey, Peter J.

AU - Biankin, Andrew V.

AU - Boutros, Paul C.

AU - Campbell, Peter J.

AU - Chang, David K.

AU - Cooke, Susanna L.

AU - Deshpande, Vikram

AU - Faltas, Bishoy M.

AU - Faquin, William C.

AU - Garraway, Levi

AU - Getz, Gad

AU - Grimmond, Sean M.

AU - Haider, Syed

AU - Hoadley, Katherine A.

AU - Kaiser, Vera B.

AU - Kato, Mamoru

AU - Kübler, Kirsten

AU - Lazar, Alexander J.

AU - Li, Constance H.

AU - Louis, David N.

AU - Margolin, Adam

AU - Martin, Sancha

AU - Nahal-Bose, Hardeep K.

AU - Nielsen, G. Petur

AU - Nik-Zainal, Serena

AU - Omberg, Larsson

AU - P’ng, Christine

AU - Perry, Marc D.

AU - Rheinbay, Esther

AU - Rubin, Mark A.

AU - Semple, Colin A.

AU - Sgroi, Dennis C.

AU - Shibata, Tatsuhiro

AU - Siebert, Reiner

AU - Smith, Jaclyn

AU - Stein, Lincoln D.

AU - Stobbe, Miranda D.

AU - Sun, Ren X.

AU - Thai, Kevin

AU - Wright, Derek W.

AU - PCAWG Consortium

AU - PCAWG Tumor Subtypes and Clinical Translation Working Group

AU - Townend, David

PY - 2022/12/8

Y1 - 2022/12/8

N2 - In the published version of this paper, the members of the Pan-Cancer Analysis of Whole Genomes (PCAWG) Consortiumwere listed in the Supplementary Information; however, these members shouldhave been included in themainpaper.The originalArticle has been corrected to include the members and affiliations of the PCAWG Consortium in the main paper; the corrections have been made to the HTML version of the Article but not the PDF version. Additional corrections to affiliations and author names have been made to the PDF and HTML versions of the original Article for consistency of information between the PCAWG list and the main paper.

AB - In the published version of this paper, the members of the Pan-Cancer Analysis of Whole Genomes (PCAWG) Consortiumwere listed in the Supplementary Information; however, these members shouldhave been included in themainpaper.The originalArticle has been corrected to include the members and affiliations of the PCAWG Consortium in the main paper; the corrections have been made to the HTML version of the Article but not the PDF version. Additional corrections to affiliations and author names have been made to the PDF and HTML versions of the original Article for consistency of information between the PCAWG list and the main paper.

U2 - 10.1038/s41467-022-32329-6

DO - 10.1038/s41467-022-32329-6

M3 - Erratum / corrigendum / retractions

C2 - 36481665

SN - 2041-1723

VL - 13

JO - Nature Communications

JF - Nature Communications

IS - 1

M1 - 7573

ER -

Author Correction: A deep learning system accurately classifies primary and metastatic cancers using passenger mutation patterns

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Research output

A deep learning system accurately classifies primary and metastatic cancers using passenger mutation patterns

High-coverage whole-genome analysis of 1220 cancers reveals hundreds of genes deregulated by rearrangement-mediated cis-regulatory alterations

Cite this