Abstract
Here, we present a new fixed parameter tractable algorithm to compute the hybridization number r of two rooted, not necessarily binary phylogenetic trees on taxon set X in time (6(r)r!).poly(n), where n = vertical bar X vertical bar. The novelty of this approach is its use of terminals, which are maximal elements of a natural partial order on X, and several insights from the softwired clusters literature. This yields a surprisingly simple and practical bounded-search algorithm and offers an alternative perspective on the underlying combinatorial structure of the hybridization number problem.
| Original language | English |
|---|---|
| Pages (from-to) | 18-25 |
| Number of pages | 8 |
| Journal | IEEE ACM Transactions on Computational Biology and Bioinformatics (TCBB) |
| Volume | 10 |
| Issue number | 1 |
| DOIs | |
| Publication status | Published - 2013 |
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