A formalization of one of the main claims of 'Overlap of vitamin A and vitamin D target genes with CAKUT-related processes' by Ozisik et al. 2021

Friederike Ehrhart; Chris T. Evelo

doi:10.3233/DS-210041

A formalization of one of the main claims of 'Overlap of vitamin A and vitamin D target genes with CAKUT-related processes' by Ozisik et al. 2021

Friederike Ehrhart^*
, Chris T. Evelo

^*Corresponding author for this work

Research output: Contribution to journal › Comment/Letter to the editor › Academic › peer-review

Abstract

In a previous paper that we co-authored (Ozisik et al. 2021) we showed that in some cases Vitamin A and Vitamin D receptor binding sites are present in genes associated with Congenital Anomalies of the Kidney and Urinary Tract (CAKUT). From that finding we derived the statement that sometimes Vitamin A targets are the same as genes associated with CAKUT. We present here a formalization of that claim, stating that all things of class 'genes associated with CAKUT' sometimes have a relation of type 'is same as' to a thing of class 'targets of vitamin A'.

Original language	English
Pages (from-to)	25-27
Number of pages	3
Journal	Data Science
Volume	5
Issue number	1
DOIs	https://doi.org/10.3233/DS-210041
Publication status	Published - 22 Mar 2022

Keywords

Genes associated with CAKUT
targets of vitamin A

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10.3233/DS-210041Licence: CC BY-NC

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title = "A formalization of one of the main claims of 'Overlap of vitamin A and vitamin D target genes with CAKUT-related processes' by Ozisik et al. 2021",

abstract = "In a previous paper that we co-authored (Ozisik et al. 2021) we showed that in some cases Vitamin A and Vitamin D receptor binding sites are present in genes associated with Congenital Anomalies of the Kidney and Urinary Tract (CAKUT). From that finding we derived the statement that sometimes Vitamin A targets are the same as genes associated with CAKUT. We present here a formalization of that claim, stating that all things of class 'genes associated with CAKUT' sometimes have a relation of type 'is same as' to a thing of class 'targets of vitamin A'.",

keywords = "Genes associated with CAKUT, targets of vitamin A",

author = "Friederike Ehrhart and Evelo, \{Chris T.\}",

note = "Funding Information: FE and CEs work is supported by the funding from the European Union{\textquoteright}s Horizon 2020 research and innovation programme under the EJP RD COFUND-EJP N° 825575. Publisher Copyright: {\textcopyright} 2022 - The authors. Published by IOS Press.",

year = "2022",

month = mar,

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doi = "10.3233/DS-210041",

language = "English",

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T1 - A formalization of one of the main claims of 'Overlap of vitamin A and vitamin D target genes with CAKUT-related processes' by Ozisik et al. 2021

AU - Ehrhart, Friederike

AU - Evelo, Chris T.

N1 - Funding Information: FE and CEs work is supported by the funding from the European Union’s Horizon 2020 research and innovation programme under the EJP RD COFUND-EJP N° 825575. Publisher Copyright: © 2022 - The authors. Published by IOS Press.

PY - 2022/3/22

Y1 - 2022/3/22

N2 - In a previous paper that we co-authored (Ozisik et al. 2021) we showed that in some cases Vitamin A and Vitamin D receptor binding sites are present in genes associated with Congenital Anomalies of the Kidney and Urinary Tract (CAKUT). From that finding we derived the statement that sometimes Vitamin A targets are the same as genes associated with CAKUT. We present here a formalization of that claim, stating that all things of class 'genes associated with CAKUT' sometimes have a relation of type 'is same as' to a thing of class 'targets of vitamin A'.

AB - In a previous paper that we co-authored (Ozisik et al. 2021) we showed that in some cases Vitamin A and Vitamin D receptor binding sites are present in genes associated with Congenital Anomalies of the Kidney and Urinary Tract (CAKUT). From that finding we derived the statement that sometimes Vitamin A targets are the same as genes associated with CAKUT. We present here a formalization of that claim, stating that all things of class 'genes associated with CAKUT' sometimes have a relation of type 'is same as' to a thing of class 'targets of vitamin A'.

KW - Genes associated with CAKUT

KW - targets of vitamin A

U2 - 10.3233/DS-210041

DO - 10.3233/DS-210041

M3 - Comment/Letter to the editor

SN - 2451-8484

VL - 5

SP - 25

EP - 27

JO - Data Science

JF - Data Science

IS - 1

ER -

A formalization of one of the main claims of 'Overlap of vitamin A and vitamin D target genes with CAKUT-related processes' by Ozisik et al. 2021

Abstract

Keywords

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