Florian Caiment

Research output

Research output per year 2013 2018 2020 2021 2022 2023 2024

• 49 Article
• 2 Conference Abstract/Poster in journal
• 1 Editorial
• 1 Erratum / corrigendum / retractions
• 1 More
  • 1 Comment/Letter to the editor

Research output per year

Research output per year

Search results

• 2024

  Cluster-Partial Least Squares (c-PLS) regression analysis: Application to miRNA and metabolomic data

  Kuligowski, J., Pérez-Rubio, Á., Moreno-Torres, M., Soluyanova, P., Pérez-Rojas, J., Rienda, I., Pérez-Guaita, D., Pareja, E., Trullenque-Juan, R., Castell, J. V., Verheijen, M., Caiment, F., Jover, R. & Quintás, G., 15 Jan 2024, In: Analytica Chimica Acta. 1286, 10 p., 342052.

  Research output: Contribution to journal › Article › Academic › peer-review
• 2023

  Analysis of cell-specific transcriptional responses in human colon tissue using CIBERSORTx

  He, Y., De Benedictis, J. N., Caiment, F., van Breda, S. G. J. & de Kok, T. M. C. M., 25 Oct 2023, In: Scientific Reports. 13, 1, 10 p., 18281.

  Research output: Contribution to journal › Article › Academic › peer-review

  Open Access

• A novel orthotopic mouse model replicates human lung cancer cachexia

  van de Worp, W. R. P. H., Theys, J., González, A. S., van der Heyden, B., Verhaegen, F., Hauser, D., Caiment, F., Smeets, H. J. M., Schols, A. M. W. J., van Helvoort, A. & Langen, R. C. J., Jun 2023, In: Journal of cachexia, sarcopenia and muscle. 14, 3, p. 1410-1423 14 p.

  Research output: Contribution to journal › Article › Academic › peer-review

  Open Access

• Applying genomics in regulatory toxicology: a report of the ECETOC workshop on omics threshold on non-adversity

  Gant, T. W., Auerbach, S. S., Von Bergen, M., Bouhifd, M., Botham, P. A., Caiment, F., Currie, R. A., Harrill, J., Johnson, K., Li, D., Rouquie, D., van Ravenzwaay, B., Sistare, F., Tralau, T., Viant, M. R., van de Laan, J. W. & Yauk, C., Aug 2023, In: Archives of Toxicology. 97, 8, p. 2291-2302 12 p.

  Research output: Contribution to journal › Article › Academic › peer-review

  Open Access

• CODA: a combo-Seq data analysis workflow

  Nazzari, M., Hauser, D., van Herwijnen, M., Romitti, M., Carvalho, D. J., Kip, A. M. & Caiment, F., Jan 2023, In: Briefings in Bioinformatics. 24, 1, 14 p., bbac582.

  Research output: Contribution to journal › Article › Academic › peer-review

  Open Access

• Hypoxic oligodendrocyte precursor cell-derived VEGFA is associated with blood-brain barrier impairment

  Manukjan, N., Majcher, D., Leenders, P., Caiment, F., van Herwijnen, M., Smeets, H. J. J., Suidgeest, E., van der Weerd, L., Vanmierlo, T., Jansen, J. F. A., Backes, W. H. H., van Oostenbrugge, R. J. J., Staals, J., Fulton, D., Ahmed, Z., Blankesteijn, W. M. & Foulquier, S., 7 Aug 2023, In: Acta neuropathologica communications. 11, 1, 17 p., 128.

  Research output: Contribution to journal › Article › Academic › peer-review

  Open Access

• Investigation of the effects of phthalates on in vitro thyroid models with RNA-Seq and ATAC-Seq

  Nazzari, M., Romitti, M., Hauser, D., Carvalho, D. J., Giselbrecht, S., Moroni, L., Costagliola, S. & Caiment, F., 22 Sept 2023, In: Frontiers in Endocrinology. 14, 1, 12 p., 1200211.

  Research output: Contribution to journal › Article › Academic › peer-review

  Open Access

• IsoTools: a flexible workflow for long-read transcriptome sequencing analysis

  Lienhard, M., van den Beucken, T., Timmermann, B., Hochradel, M., Boerno, S., Caiment, F., Vingron, M. & Herwig, R., 1 Jun 2023, In: Bioinformatics. 39, 6, 10 p., btad364.

  Research output: Contribution to journal › Article › Academic › peer-review

  Open Access

• Thyroid-on-a-chip: An Organoid Platform For In Vitro Assessment of Endocrine Disruption

  Carvalho, D. J., Kip, A. M., Romitti, M., Nazzari, M., Tegel, A., Stich, M., Krause, C., Caiment, F., Costagliola, S., Moroni, L. & Giselbrecht, S., 24 Mar 2023, In: Advanced Healthcare Materials. 12, 8, 14 p., e2201555.

  Research output: Contribution to journal › Article › Academic › peer-review

  Open Access

• Wnt7a Decreases Brain Endothelial Barrier Function Via β-Catenin Activation

  Manukjan, N., Chau, S., Caiment, F., van Herwijnen, M., Smeets, H. J., Fulton, D., Ahmed, Z., Blankesteijn, W. M. & Foulquier, S., 1 Dec 2023, (E-pub ahead of print) In: Molecular Neurobiology. 14 p.

  Research output: Contribution to journal › Article › Academic › peer-review

  Open Access
• 2022

  iPSC-derived cortical neurons to study sporadic Alzheimer disease: A transcriptome comparison with post-mortem brain samples

  Verheijen, M. C. T., Krauskopf, J., Caiment, F., Nazaruk, M., Wen, Q. F., van Herwijnen, M. H. M., Hauser, D. A., Gajjar, M., Verfaillie, C., Vermeiren, Y., De Deyn, P. P., Wittens, M. M. J., Sieben, A., Engelborghs, S., Dejonckheere, W., Princen, K., Griffioen, G., Roggen, E. L. & Briedé, J. J., 1 Mar 2022, In: Toxicology Letters. 356, p. 89-99 11 p.

  Research output: Contribution to journal › Article › Academic › peer-review

  Open Access

• MicroRNA-4732-3p Is Dysregulated in Breast Cancer Patients with Cardiotoxicity, and Its Therapeutic Delivery Protects the Heart from Doxorubicin-Induced Oxidative Stress in Rats

  Sanchez-Sanchez, R., Reinal, I., Peiro-Molina, E., Buigues, M., Tejedor, S., Hernandiz, A., Selva, M., Hervas, D., Canada, A. J., Dorronsoro, A., Santaballa, A., Salvador, C., Caiment, F., Kleinjans, J., Martinez-Dolz, L., Moscoso, I., Lage, R., Gonzalez-Juanatey, J. R., Panadero, J., Aparicio-Puerta, E., & 2 othersBernad, A. & Sepulveda, P., 1 Oct 2022, In: Antioxidants. 11, 10, 23 p., 1955.

  Research output: Contribution to journal › Article › Academic › peer-review

  Open Access

• Multi-omics HeCaToS dataset of repeated dose toxicity for cardiotoxic & hepatotoxic compounds

  Verheijen, M., Sarkans, U., Wolski, W., Jennen, D., Caiment, F., Kleinjans, J. & HeCaToS Consortium, 14 Nov 2022, In: Scientific data. 9, 1, p. 699 11 p.

  Research output: Contribution to journal › Article › Academic › peer-review

  Open Access

• Predicting missing proteomics values using machine learning: Filling the gap using transcriptomics and other biological features

  Ochoteco Asensio, J., Verheijen, M. & Caiment, F., 2022, In: Computational and Structural Biotechnology Journal. 20, p. 2057-2069 13 p.

  Research output: Contribution to journal › Article › Academic › peer-review

  Open Access

• Quantitative Prediction of Steatosis in Patients with Non-Alcoholic Fatty Liver by Means of Hepatic MicroRNAs Present in Serum and Correlating with Hepatic Fat

  Quintás, G., Caiment, F., Rienda, I., Pérez-Rojas, J., Pareja, E., Castell, J. V. & Jover, R., 18 Aug 2022, In: International journal of molecular sciences. 23, 16, 13 p., 9298.

  Research output: Contribution to journal › Article › Academic › peer-review

  Open Access

• R-ODAF: Omics data analysis framework for regulatory application

  Verheijen, M. C. T., Meier, M. J., Asensio, J. O., Gant, T. W., Tong, W. D., Yauk, C. L. & Caiment, F., 1 Jun 2022, In: Regulatory Toxicology and Pharmacology. 131, 10 p., 105143.

  Research output: Contribution to journal › Article › Academic › peer-review

  Open Access

• Transcriptomics analysis of human iPSC-derived dopaminergic neurons reveals a novel model for sporadic Parkinson's disease

  Krauskopf, J., Eggermont, K., Da Costa, R. F. M., Bohler, S., Hauser, D., Caiment, F., de Kok, T. M., Verfaillie, C. & Kleinjans, J. C., Oct 2022, In: Molecular Psychiatry. 27, 10, p. 4355-4367 13 p.

  Research output: Contribution to journal › Article › Academic › peer-review
• 2021

  A Model-Based Workflow to Benchmark the Clinical Cholestasis Risk of Drugs

  Baier, V., Clayton, O., Nudischer, R., Cordes, H., Schneider, A. R. P., Thiel, C., Wittenberger, T., Moritz, W., Blank, L. M., Neumann, U. P., Trautwein, C., Kelm, J., Schrooders, Y., Caiment, F., Gmuender, H., Roth, A., Castell, J. V., Kleinjans, J. & Kuepfer, L., Nov 2021, In: Clinical Pharmacology & Therapeutics. 110, 5, p. 1293-1301 9 p.

  Research output: Contribution to journal › Article › Academic › peer-review

  Open Access

• Comparing in vitro human liver models to in vivo human liver using RNA-Seq

  Gupta, R., Schrooders, Y., Hauser, D., van Herwijnen, M., Albrecht, W., ter Braak, B., Brecklinghaus, T., Castell, J. V., Elenschneider, L., Escher, S., Guye, P., Hengstler, J. G., Ghallab, A., Hansen, T., Leist, M., Maclennan, R., Moritz, W., Tolosa, L., Tricot, T., Verfaillie, C., & 4 othersWalker, P., van de Water, B., Kleinjans, J. & Caiment, F., Feb 2021, In: Archives of Toxicology. 95, 2, p. 573-589 17 p.

  Research output: Contribution to journal › Article › Academic › peer-review

  Open Access

• FuSe: a tool to move RNA-Seq analyses from chromosomal/gene loci to functional grouping of mRNA transcripts

  Gupta, R., Schrooders, Y., Verheijen, M., Roth, A., Kleinjans, J. & Caiment, F., 1 Feb 2021, In: Bioinformatics. 37, 3, p. 375-381 7 p.

  Research output: Contribution to journal › Article › Academic › peer-review

  Open Access

• Generation and characterization of iPSC-derived renal proximal tubule-like cells with extended stability

  Chandrasekaran, V., Carta, G., Pereira, D. D., Gupta, R., Murphy, C., Feifel, E., Kern, G., Lechner, J., Cavallo, A. L., Gupta, S., Caiment, F., Kleinjans, J. C. S., Gstraunthaler, G., Jennings, P. & Wilmes, A., 2 Jun 2021, In: Scientific Reports. 11, 1, 17 p., 11575.

  Research output: Contribution to journal › Article › Academic › peer-review

  Open Access

• Hepatic Steatosis Contributes to the Development of Muscle Atrophy via Inter-Organ Crosstalk

  Pasmans, K., Adriaens, M. E., Olinga, P., Langen, R., Rensen, S. S., Schaap, F. G., Olde Damink, S. W. M., Caiment, F., van Loon, L. J. C., Blaak, E. E. & Meex, R. C. R., 11 Oct 2021, In: Frontiers in Endocrinology. 12, 15 p., 733625.

  Research output: Contribution to journal › Article › Academic › peer-review

  Open Access

• Identifying novel transcript biomarkers for hepatocellular carcinoma (HCC) using RNA-Seq datasets and machine learning

  Gupta, R., Kleinjans, J. & Caiment, F., 27 Aug 2021, In: BMC Cancer. 21, 1, 15 p., 962.

  Research output: Contribution to journal › Article › Academic › peer-review

  Open Access

• Pharmacological inhibition of 17β-hydroxysteroid dehydrogenase impairs human endometrial cancer growth in an orthotopic xenograft mouse model

  Xanthoulea, S., Konings, G. F. J., Saarinen, N., Delvoux, B., Kooreman, L. F. S., Koskimies, P., Hakkinen, M. R., Auriola, S., D'Avanzo, E., Walid, Y., Verhaegen, F., Lieuwes, N. G., Caiment, F., Kruitwagen, R., Romano, A. & ENITEC, 28 Jun 2021, In: Cancer Letters. 508, p. 18-29 12 p.

  Research output: Contribution to journal › Article › Academic › peer-review

  Open Access
• 2020

  Acrylamide alters CREB and retinoic acid signalling pathways during differentiation of the human neuroblastoma SH-SY5Y cell line

  Attoff, K., Johansson, Y., Cediel-Ulloa, A., Lundqvist, J., Gupta, R., Caiment, F., Gliga, A. & Forsby, A., 7 Oct 2020, In: Scientific Reports. 10, 1, 15 p., 16714.

  Research output: Contribution to journal › Article › Academic › peer-review

  Open Access

• Network integration and modelling of dynamic drug responses at multi-omics levels

  Selevsek, N., Caiment, F., Nudischer, R., Gmuender, H., Agarkova, I., Atkinson, F. L., Bachmann, I., Baier, V., Barel, G., Bauer, C., Boerno, S., Bosc, N., Clayton, O., Cordes, H., Deeb, S., Gotta, S., Guye, P., Hersey, A., Hunter, F. M. I., Kunz, L., & 23 othersLewalle, A., Lienhard, M., Merken, J., Minguet, J., Oliveira, B., Pluess, C., Sarkans, U., Schrooders, Y., Schuchhardt, J., Smit, I., Thiel, C., Timmermann, B., Verheijen, M., Wittenberger, T., Wolski, W., Zerck, A., Heymans, S., Kuepfer, L., Roth, A., Schlapbach, R., Niederer, S., Herwig, R. & Kleinjans, J., 15 Oct 2020, In: Communications Biology. 3, 1, 15 p., 573.

  Research output: Contribution to journal › Article › Academic › peer-review

  Open Access

• RATEmiRs: the rat atlas of tissue-specific and enriched miRNAs for discerning baseline expression exclusivity of candidate biomarkers

  Bushel, P. R., Caiment, F., Wu, H., O'Lone, R., Day, F., Calley, J., Smith, A., Li, J. Y. & Harrill, A. H., 3 May 2020, In: Rna Biology. 17, 5, p. 630-636 7 p.

  Research output: Contribution to journal › Article › Academic › peer-review

  Open Access

• SCREENED: A Multistage Model of Thyroid Gland Function for Screening Endocrine-Disrupting Chemicals in a Biologically Sex-Specific Manner

  Moroni, L., Barbaro, F., Caiment, F., Coleman, O., Costagliola, S., Di Conza, G., Elviri, L., Giselbrecht, S., Krause, C., Mota, C., Nazzari, M., Pennington, S. R., Ringwald, A., Sandri, M., Thomas, S., Waddington, J. & Toni, R., May 2020, In: International journal of molecular sciences. 21, 10, 23 p., 3648.

  Research output: Contribution to journal › Article › Academic › peer-review

  Open Access

• The MicroRNA-based Liquid Biopsy Improves Early Assessment of Lethal Acetaminophen Poisoning: A Case Report

  Krauskopf, J., Gosink, M. M., Schomaker, S., Caiment, F., Warner, R., Johnson, K., Kleinjans, J. & Aubrecht, J., 22 Feb 2020, In: American journal of case reports. 21, 12 p., 919289.

  Research output: Contribution to journal › Article › Academic › peer-review

  Open Access

• Towards the development of an omics data analysis framework

  Verheijen, M., Tong, W. D., Shi, L. M., Gant, T. W., Seligman, B. & Caiment, F., 1 Apr 2020, In: Regulatory Toxicology and Pharmacology. 112, 4 p., 104621.

  Research output: Contribution to journal › Article › Academic › peer-review

• Valproic acid promotes mitochondrial dysfunction in primary human hepatocytes in vitro; impact of C/EBPα-controlled gene expression

  Caiment, F., Wolters, J., Smit, E., Schrooders, Y., Kleinjans, J. & van den Beucken, T., 1 Oct 2020, In: Archives of Toxicology. 94, 10, p. 3463-3473 11 p.

  Research output: Contribution to journal › Article › Academic › peer-review

  Open Access
• 2019

  DMSO induces drastic changes in human cellular processes and epigenetic landscape in vitro

  Verheijen, M., Lienhard, M., Schrooders, Y., Clayton, O., Nudischer, R., Boerno, S., Timmermann, B., Selevsek, N., Schlapbach, R., Gmuender, H., Gotta, S., Geraedts, J., Herwig, R., Kleinjans, J. & Caiment, F., 15 Mar 2019, In: Scientific Reports. 9, p. 1-12 12 p., 4641.

  Research output: Contribution to journal › Article › Academic › peer-review

  Open Access
• 2018

  Bringing in vitro analysis closer to in vivo: Studying doxorubicin toxicity and associated mechanisms in 3D human microtissues with PBPK-based dose modelling

  Verheijen, M., Schrooders, Y., Gmuender, H., Nudischer, R., Clayton, O., Hynes, J., Niederer, S., Cordes, H., Kuepfer, L., Kleinjans, J. & Caiment, F., 15 Sept 2018, In: Toxicology Letters. 294, p. 184-192 9 p.

  Research output: Contribution to journal › Article › Academic › peer-review

  Open Access

• Integrated 'omics analysis reveals new drug-induced mitochondrial perturbations in human hepatocytes

  Wolters, J. E. J., van Breda, S. G. J., Grossmann, J., Fortes, C., Caiment, F. & Kleinjans, J. C. S., 1 Jun 2018, In: Toxicology Letters. 289, p. 1-13 13 p.

  Research output: Contribution to journal › Article › Academic › peer-review

  Open Access

• RATEmiRs: the rat atlas of tissue-specific and enriched miRNAs database

  Bushel, P. R., Caiment, F., Wu, H., O'Lone, R., Day, F., Calley, J., Smith, A. & Li, J., 19 Nov 2018, In: BMC Genomics. 19, p. 1-13 13 p., 825.

  Research output: Contribution to journal › Article › Academic › peer-review

  Open Access

• The human circulating miRNome reflects multiple organ disease risks in association with short-term exposure to traffic-related air pollution

  Krauskopf, J., Caiment, F., van Veldhoven, K., Chadeau-Hyam, M., Sinharay, R., Chung, K. F., Cullinan, P., Collins, P., Barratt, B., Kelly, F. J., Vermeulen, R., Vineis, P., de Kok, T. M. & Kleinjans, J. C., 1 Apr 2018, In: Environment International. 113, p. 26-34 9 p.

  Research output: Contribution to journal › Article › Academic › peer-review

  Open Access

• Transcriptomic study of the toxic mechanism triggered by beauvericin in Jurkat cells

  Escriva, L., Jennen, D., Caiment, F. & Manyes, L., 1 Mar 2018, In: Toxicology Letters. 284, p. 213-221 9 p.

  Research output: Contribution to journal › Article › Academic › peer-review

  Open Access

  File
  24 Downloads (Pure)

• Translational regulation is a key determinant of the cellular response to benzo[a]pyrene

  Smit, E., Caiment, F., Piepers, J., Kleinjans, J. C. S. & van den Beucken, T., 1 Oct 2018, In: Toxicology Letters. 295, p. 144-152 9 p.

  Research output: Contribution to journal › Article › Academic › peer-review
• 2017

  Nuclear and Mitochondrial DNA Methylation Patterns Induced by Valproic Acid in Human Hepatocytes

  Wolters, J. E. J., van Breda, S. G. J., Caiment, F., Claessen, S. M., de Kok, T. M. C. M. & Kleinjans, J. C. S., Oct 2017, In: Chemical Research in Toxicology. 30, 10, p. 1847-1854 8 p.

  Research output: Contribution to journal › Article › Academic › peer-review

  Open Access

• Serum microRNA signatures as "liquid biopsies" for interrogating hepatotoxic mechanisms and liver pathogenesis in human

  Krauskopf, J., de Kok, T. M., Schomaker, S. J., Gosink, M., Burt, D. A., Chandler, P., Warner, R. L., Johnson, K. J., Caiment, F., Kleinjans, J. C. & Aubrecht, J., 17 May 2017, In: PLOS ONE. 12, 5, 17 p., 0177928.

  Research output: Contribution to journal › Article › Academic › peer-review

  Open Access
• 2016

  The Rat microRNA body atlas; Evaluation of the microRNA content of rat organs through deep sequencing and characterization of pancreas enriched miRNAs as biomarkers of pancreatic toxicity in the rat and dog

  Smith, A., Calley, J., Mathur, S., Qian, H-R., Wu, H., Farmen, M., Caiment, F., Bushel, P. R., Li, J., Fisher, C., Kirby, P., Koenig, E., Hall, D. G. & Watson, D. E., 30 Aug 2016, In: BMC Genomics. 17, 694.

  Research output: Contribution to journal › Article › Academic › peer-review

  Open Access
• 2015

  Application of High-Throughput Sequencing to Circulating microRNAs Reveals Novel Biomarkers for Drug-Induced Liver Injury

  Krauskopf, J., Caiment, F., Claessen, S. M., Johnson, K. J., Warner, R. L., Schomaker, S. J., Burt, D. A., Aubrecht, J. & Kleinjans, J., Feb 2015, In: Toxicological Sciences. 143, 2, p. 268-276

  Research output: Contribution to journal › Article › Academic › peer-review

  Open Access

• Development and regulatory application of microRNA biomarkers

  Krauskopf, J., Verheijen, M., Kleinjans, J. C., de Kok, T. M. & Caiment, F., 2015, In: Biomarkers in Medicine. 9, 11, p. 1137-1151

  Research output: Contribution to journal › Article › Academic › peer-review

• diXa: a data infrastructure for chemical safety assessment

  Hendrickx, D., Aerts, H., Caiment, F., Clark, D., Ebbels, T. M., Evelo, C. T., Gmuender, H., Hebels, D. G., Herwig, R., Hescheler, J., Jennen, D. G., Jetten, M. J., Kanterakis, S., Keun, H. C., Matser, V., Overington, J. P., Pilicheva, E., Sarkans, U., Segura-Lepe, M. P., Sotiriadou, I., & 4 othersWittenberger, T., Wittwehr, C., Zanzi, A. & Kleinjans, J. C., 1 May 2015, In: Bioinformatics. 31, 9, p. 1505-1507 3 p.

  Research output: Contribution to journal › Article › Academic › peer-review

  Open Access

  File
  49 Downloads (Pure)

• High-throughput data integration of RNA-miRNA-circRNA reveals novel insights into mechanisms of benzo[a]pyrene-induced carcinogenicity

  Caiment, F., Gaj, S., Claessen, S. & Kleinjans, J., 11 Mar 2015, In: Nucleic Acids Research. 43, 5, p. 2525-2534

  Research output: Contribution to journal › Article › Academic › peer-review

  Open Access
• 2014

  A comprehensive assessment of RNA-seq accuracy, reproducibility and information content by the Sequencing Quality Control Consortium

  Su, Z., Labaj, P. P., Li, S., Thierry-Mieg, J., Thierry-Mieg, D., Shi, W., Wang, C., Schroth, G. P., Setterquist, R. A., Thompson, J. F., Jones, W. D., Xiao, W., Xu, W., Jensen, R. V., Kelly, R., Xu, J., Conesa, A., Furlanello, C., Gao, H., Hong, H., & 141 othersJafari, N., Letovsky, S., Liao, Y., Lu, F., Oakeley, E. J., Peng, Z., Praul, C. A., Santoyo-Lopez, J., Scherer, A., Shi, T., Smyth, G. K., Staedtler, F., Sykacek, P., Tan, X-X., Thompson, E. A., Vandesompele, J., Wang, M. D., Wang, J., Wolfinger, R. D., Zavadil, J., Auerbach, S. S., Bao, W., Binder, H., Blomquist, T., Brilliant, M. H., Bushel, P. R., Cain, W., Catalano, J. G., Chang, C-W., Chen, T., Chen, G., Chen, R., Chierici, M., Chu, T-M., Clevert, D-A., Deng, Y., Derti, A., Devanarayan, V., Dong, Z., Dopazo, J., Du, T., Fang, H., Fang, Y., Fasold, M., Fernandez, A., Fischer, M., Furio-Tari, P., Fuscoe, J. C., Caiment, F., Gaj, S., Gandara, J., Gao, H., Ge, W., Gondo, Y., Gong, B., Gong, M., Gong, Z., Green, B., Guo, C., Guo, L., Guo, L-W., Hadfield, J., Hellemans, J., Hochreiter, S., Jia, M., Jian, M., Johnson, C. D., Kay, S., Kleinjans, J., Lababidi, S., Levy, S., Li, Q-Z., Li, L., Li, P., Li, Y., Li, H., Li, J., Li, S., Lin, S. M., Lopez, F. J., Lu, X., Luo, H., Ma, X., Meehan, J., Megherbi, D. B., Mei, N., Mu, B., Ning, B., Pandey, A., Perez-Florido, J., Perkins, R. G., Peters, R., Phan, J. H., Pirooznia, M., Qian, F., Qing, T., Rainbow, L., Rocca-Serra, P., Sambourg, L., Sansone, S-A., Schwartz, S., Shah, R., Shen, J., Smith, T. M., Stegle, O., Stralis-Pavese, N., Stupka, E., Suzuki, Y., Szkotnicki, L. T., Tinning, M., Tu, B., van Deft, J., Vela-Boza, A., Venturini, E., Walker, S. J., Wan, L., Wang, W., Wang, J., Wang, J., Wieben, E. D., Willey, J. C., Wu, P-Y., Xuan, J., Yang, Y., Ye, Z., Yin, Y., Yu, Y., Yuan, Y-C., Zhang, J., Zhang, K. K., Zhang, W., Zhang, W., Zhang, Y., Zhao, C., Zheng, Y., Zhou, Y., Zumbo, P., Tong, W., Kreil, D. P., Mason, C. E. & Shi, L., Sept 2014, In: Nature Biotechnology. 32, 9, p. 903-914

  Research output: Contribution to journal › Article › Academic › peer-review

• Assessing compound carcinogenicity in vitro using connectivity mapping

  Caiment, F., Tsamou, M., Jennen, D. & Kleinjans, J., Jan 2014, In: Carcinogenesis. 35, 1, p. 201-207

  Research output: Contribution to journal › Article › Academic › peer-review

  Open Access

• The concordance between RNA-seq and microarray data depends on chemical treatment and transcript abundance

  Wang, C., Gong, B., Bushel, P. R., Thierry-Mieg, J., Thierry-Mieg, D., Xu, J., Fang, H., Hong, H., Shen, J., Su, Z., Meehan, J., Li, X., Yang, L., Li, H., Labaj, P. P., Kreil, D. P., Megherbi, D., Gaj, S., Caiment, F., van Delft, J., & 26 othersKleinjans, J., Scherer, A., Devanarayan, V., Wang, J., Yang, Y., Qian, H-R., Lancashire, L. J., Bessarabova, M., Nikolsky, Y., Furlanello, C., Chierici, M., Albanese, D., Jurman, G., Riccadonna, S., Filosi, M., Visintainer, R., Zhang, K. K., Li, J., Hsieh, J-H., Svoboda, D. L., Fuscoe, J. C., Deng, Y., Shi, L., Paules, R. S., Auerbach, S. S. & Tong, W., Sept 2014, In: Nature Biotechnology. 32, 9, p. 926-932

  Research output: Contribution to journal › Article › Academic › peer-review
• 2013

  Deep sequencing reveals abundant noncanonical retroviral microRNAs in B-cell leukemia/lymphoma

  Rosewick, N., Momont, M., Durkin, K., Takeda, H., Caiment, F., Cleuter, Y., Vernin, C., Mortreux, F., Wattel, E., Burny, A., Georges, M. & Van den Broeke, A., 5 Feb 2013, In: Proceedings of the National Academy of Sciences of the United States of America. 110, 6, p. 2306-2311

  Research output: Contribution to journal › Article › Academic › peer-review

  Open Access