Egon Willighagen

2024

A template wizard for the cocreation of machine-readable data-reporting to harmonize the evaluation of (nano)materials

Jeliazkova, N., Longhin, E., El yamani, N., Rundén-Pran, E., Moschini, E., Serchi, T., Vrček, I. V., Burgum, M. J., Doak, S. H., Cimpan, M. R., Rios-Mondragon, I., Cimpan, E., Battistelli, C. L., Bossa, C., Tsekovska, R., Drobne, D., Novak, S., Repar, N., Ammar, A. & Nymark, P. & 18 others, Di battista, V., Sosnowska, A., Puzyn, T., Kochev, N., Iliev, L., Jeliazkov, V., Reilly, K., Lynch, I., Bakker, M., Delpivo, C., Sánchez jiménez, A., Fonseca, A. S., Manier, N., Fernandez-Cruz, M. L., Rashid, S., Willighagen, E., D apostolova, M. & Dusinska, M., Sept 2024, In: Nature Protocols. 19, 9, p. 2642-2684 43 p.

Research output: Contribution to journal › (Systematic) Review article › peer-review

1 Downloads (Pure)

Building expertise on FAIR through evolving Bring Your Own Data (BYOD) workshops: describing the data, software, and managementfocused approaches and their evolution

Bernabé, C. H., Thielemans, L., Kaliyaperumal, R., Carta, C., Zhang, S., van Gelder, C. W. G., Benis, N., Santos, L. B. D. S., Cornet, R., dos Santos Vieira, B., Lalout , N., Henriques, I., Cámara Ballesteros, A., Burger, K., Kersloot, M. G., Ehrhart, F., Van Enckevort, E., Evelo, C., Gray, A. & Hanauer, M. & 13 others, Hettne, K., de Ligt, J., Pereira, A., Queralt-Rosinach, N., Schultes, E., Taruscio, D., Waagmeester, A., Wilkinson, M., Willighagen, E., Jansen, M., Mons, B., Roos, M. & Jacobsen, A., 1 May 2024, Data Intelligence, p. 429-456, 28 p.

Research output: Working paper / Preprint › Preprint

Open Access

Discovering life's directed metabolic (sub)paths to interpret human biochemical markers using the DSMN tool

Slenter, D., Kutmon, M., Evelo, C. T. & Willighagen, E. L., 17 Jan 2024, In: Digital Discovery. 3, 1, p. 81-98 18 p.

Research output: Contribution to journal › Article › Academic › peer-review

Open Access

FAIR assessment of nanosafety data reusability with community standards

Ammar, A., Evelo, C. & Willighagen, E., 16 May 2024, In: Scientific data. 11, 1, 13 p., 503.

Research output: Contribution to journal › Article › Academic › peer-review

Open Access

From papers to RDF-based integration of physicochemical data and adverse outcome pathways for nanomaterials

van Rijn, J. P. M., Martens, M., Ammar, A., Cimpan, M. R., Fessard, V., Hoet, P., Jeliazkova, N., Murugadoss, S., Vinkovic Vrcek, I. & Willighagen, E. L., 1 May 2024, In: Journal of Cheminformatics. 16, 1, 15 p., 49.

Research output: Contribution to journal › Article › Academic › peer-review

Open Access

Governance of advanced materials: Shaping a safe and sustainable future

Groenewold, M., Bleeker, E. A. J., Noorlander, C. W., Sips, A. J. A. M., van der Zee, M., Aitken, R. J., Baker, J. H., Bakker, M. I., Bouman, E. A., Doak, S. H., Drobne, D., Dumit, V. I., Florin, M.-V., Fransman, W., Gonzalez, M. M., Heunisch, E., Isigonis, P., Jeliazkova, N., Jensen, K. A. & Kuhlbusch, T. & 12 others, Lynch, I., Morrison, M., Porcari, A., Rodríguez-Llopis, I., Pozuelo, B. M., Resch, S., Säämänen, A. J., Serchi, T., Soeteman-Hernandez, L. G., Willighagen, E., Dusinska, M. & Scott-Fordsmand, J. J., Jul 2024, In: NanoImpact. 35, 12 p., 100513.

Research output: Contribution to journal › Article › Academic › peer-review

1 Downloads (Pure)

Linking nanomaterial-induced mitochondrial dysfunction to existing adverse outcome pathways for chemicals

Murugadoss, S., Vinkovic Vrcek, I., Schaffert, A., Paparella, M., Pem, B., Sosnowska, A., Stepnik, M., Martens, M., Willighagen, E. L., Puzyn, T., Roxana Cimpan, M., Lemaire, F., Mertens, B., Dusinska, M., Fessard, V. & Hoet, P. H., Jan 2024, In: ALTEX. 41, 1, p. 76-90 15 p.

Research output: Contribution to journal › Article › Academic › peer-review

Open Access

The Chemistry Development Kit in 2024: improving cheminformatics research

Willighagen, E., Teunis, M. & De haan, A., 17 Apr 2024, In: Research Ideas and Outcomes. 10, 7 p., e124884.

Research output: Contribution to journal › Article › Professional

Open Access

The role of FAIR nanosafety data and nanoinformatics in achieving the UN sustainable development goals: the NanoCommons experience

Serrano, B. A., Gheorghe, L. C., Exner, T. E., Resch, S., Wolf, C., Himly, M., Falk, A., Bossa, N., Vazquez, S., Papadiamantis, A. G., Afantitis, A., Melagraki, G., Maier, D., Saramveis, H., Willighagen, E., Lobaskin, V., Oldfield, J. D. & Lynch, I., 27 Feb 2024, In: RSC Sustainability. 2, 5, p. 1378-1399 22 p.

Research output: Contribution to journal › Article › Academic › peer-review

Open Access

WikiPathways 2024: next generation pathway database

Agrawal, A., Balci, H., Hanspers, K., Coort, S. L., Martens, M., Slenter, D. N., Ehrhart, F., Digles, D., Waagmeester, A., Wassink, I., Abbassi-Daloii, T., Lopes, E. N., Iyer, A., Acosta, J. M., Willighagen, L. G., Nishida, K., Riutta, A., Basaric, H., Evelo, C. T. & Willighagen, E. L. & 2 others, Kutmon, M. & Pico, A. R., Jan 2024, In: Nucleic acids research. 52, D1, p. D679–D689 11 p.

Research output: Contribution to journal › Article › Academic › peer-review

Open Access

2023

A data reusability assessment in the nanosafety domain based on the NSDRA framework followed by an exploratory quantitative structure activity relationships (QSAR) modeling targeting cellular viability

Furxhi, I., Willighagen, E., Evelo, C., Costa, A., Gardini, D. & Ammar, A., 1 Jul 2023, In: NanoImpact. 31, 1, 16 p., 100475.

Research output: Contribution to journal › Article › Academic › peer-review

Open Access

Artificial intelligence for natural product drug discovery

Mullowney, M. W., Duncan, K. R., Elsayed, S. S., Garg, N., van der Hooft, J. J. J., Martin, N. I., Meijer, D., Terlouw, B. R., Biermann, F., Blin, K., Durairaj, J., Gorostiola González, M., Helfrich, E. J. N., Huber, F., Leopold-Messer, S., Rajan, K., de Rond, T., van Santen, J. A., Sorokina, M. & Balunas, M. J. & 32 others, Beniddir, M. A., van Bergeijk, D. A., Carroll, L. M., Clark, C. M., Clevert, D. A., Dejong, C. A., Du, C., Ferrinho, S., Grisoni, F., Hofstetter, A., Jespers, W., Kalinina, O. V., Kautsar, S. A., Kim, H., Leao, T. F., Masschelein, J., Rees, E. R., Reher, R., Reker, D., Schwaller, P., Segler, M., Skinnider, M. A., Walker, A. S., Willighagen, E. L., Zdrazil, B., Ziemert, N., Goss, R. J. M., Guyomard, P., Volkamer, A., Gerwick, W. H., Et al. & van Westen, G. J. P., Nov 2023, In: Nature Reviews Drug Discovery. 22, 11, p. 895–916 22 p.

Research output: Contribution to journal › (Systematic) Review article › peer-review

Open Access

File

121 Downloads (Pure)

Author Correction: A protocol for adding knowledge to Wikidata

Waagmeester, A., Willighagen, E. L., Su, A. I., Kutmon, M., Gayo, J. E. L., Fernández-Álvarez, D., Groom, Q., Schaap, P. J., Verhagen, L. M. & Koehorst, J. J., 16 Nov 2023, In: Bmc Biology. 21, 1, 2 p., 261.

Research output: Contribution to journal › Erratum / corrigendum / retractions › Academic

Open Access

BioHackEU23 report: Extending interoperability of experimental data using modular queries across biomedical resources

Gadiya, Y., Ammar, A., Willighagen, E., Martinat, D., Sima, A. C., Balci, H. & Abbassi Daloii, T., 2023, Barcelona: BioHackrXiv Preprints, 9 p.

Research output: Working paper / Preprint › Preprint

Open Access

CiTO support for BioHackrXiv

Willighagen, E., Ohta, T., Castro, L. J. & Prins, P., 2023, BioHackrXiv Preprints, 3 p.

Research output: Working paper / Preprint › Preprint

Open Access

Community curation of kinetic data to supportmetabolic models through semantic web technology

Slenter, D. & Willighagen, E., 2023, Zenodo, 21 p.

Research output: Working paper / Preprint › Preprint

Creating, curating and querying computer models of biological pathways for Inherited Metabolic Disorders

Slenter, D. & Willighagen, E., 2023, Cold Spring Harbor Laboratory - bioRxiv, 16 p.

Research output: Working paper / Preprint › Preprint

Drug-target identification in COVID-19 disease mechanisms using computational systems biology approaches

Niarakis, A., Ostaszewski, M., Mazein, A., Kuperstein, I., Kutmon, M., Gillespie, M. E., Funahashi, A., Acencio, M. L., Hemedan, A., Aichem, M., Klein, K., Czauderna, T., Burtscher, F., Yamada, T. G., Hiki, Y., Hiroi, N. F., Hu, F., Pham, N., Ehrhart, F. & Willighagen, E. L. & 32 others, Valdeolivas, A., Dugourd, A., Messina, F., Esteban-Medina, M., Peña-Chilet, M., Rian, K., Soliman, S., Aghamiri, S. S., Puniya, B. L., Naldi, A., Helikar, T., Singh, V., Fernández, M. F., Bermudez, V., Tsirvouli, E., Montagud, A., Noël, V., Ponce-de-Leon, M., Maier, D., Bauch, A., Gyori, B. M., Bachman, J. A., Luna, A., Piñero, J., Furlong, L. I., Balaur, I., Rougny, A., Jarosz, Y., Overall, R. W., Phair, R., Evelo, C. & COVID-19 Disease Map Community, 2023, In: Frontiers in Immunology. 14, 1282859.

Research output: Contribution to journal › Article › Academic › peer-review

Open Access

ELIXIR and Toxicology: a community in development

Martens, M., Stierum, R., Schymanski, E. L., Evelo, C. T., Aalizadeh, R., Aladjov, H., Arturi, K., Audouze, K., Babica, P., Berka, K., Bessems, J., Blaha, L., Bolton, E. E., Cases, M., Damalas, D. ?., Dave, K., Dilger, M., Exner, T., Geerke, D. P. & Grafström, R. & 32 others, Gray, A., Hancock, J. M., Hollert, H., Jeliazkova, N., Jennen, D., Jourdan, F., Kahlem, P., Klanova, J., Kleinjans, J., Kondic, T., Kone, B., Lynch, I., Maran, U., Martinez Cuesta, S., Ménager, H., Neumann, S., Nymark, P., Oberacher, H., Ramirez, N., Remy, S., Rocca-Serra, P., Salek, R. M., Sallach, B., Sansone, S.-A., Sanz, F., Sarimveis, H., Sarntivijai, S., Schulze, T., Slobodnik, J., Spjuth, O., Willighagen, E. & Et al., 3 Oct 2023, In: F1000Research. 10, 1, 20 p., 1129.

Research output: Contribution to journal › Article › Academic › peer-review

Open Access

Extending inherited metabolic disorder diagnostics with biomarker interaction visualizations

Slenter, D. N., Hemel, I. M. G. M., Evelo, C. T., Bierau, J., Willighagen, E. L. & Steinbusch, L. K. M., 26 Apr 2023, In: Orphanet Journal of Rare Diseases. 18, 1, 16 p., 95.

Research output: Contribution to journal › Article › Academic › peer-review

Open Access

From principles to reality. FAIR implementation in the nanosafety community

Dumit, V. I., Ammar, A., Bakker, M. I., Bañares, M. A., Bossa, C., Costa, A., Cowie, H., Drobne, D., Exner, T. E., Farcal, L., Friedrichs, S., Furxhi, I., Grafström, R., Haase, A., Himly, M., Jeliazkova, N., Lynch, I., Maier, D., Noorlander, C. W. & Shin, H. K. & 4 others, Soler-Illia, G. J. A. A., Suarez-Merino, B., Willighagen, E. & Nymark, P., 1 Aug 2023, In: Nano Today. 51, 1, 6 p., 101923.

Research output: Contribution to journal › Article › Academic › peer-review

Open Access

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63 Downloads (Pure)

Guiding the choice of informatics software and tools for lipidomics research applications

Ni, Z., Wölk, M., Jukes, G., Mendivelso espinosa, K., Ahrends, R., Aimo, L., Alvarez-Jarreta, J., Andrews, S., Andrews, R., Bridge, A., Clair, G. C., Conroy, M. J., Fahy, E., Gaud, C., Goracci, L., Hartler, J., Hoffmann, N., Kopczyinki, D., Korf, A. & Lopez-Clavijo, A. F. & 14 others, Malik, A., Ackerman, J. M., Molenaar, M. R., O’donovan, C., Pluskal, T., Shevchenko, A., Slenter, D., Siuzdak, G., Kutmon, M., Tsugawa, H., Willighagen, E. L., Xia, J., O’donnell, V. B. & Fedorova, M., Feb 2023, In: Nature Methods. 20, 2, p. 193-204 12 p.

Research output: Contribution to journal › Article › Academic › peer-review

Open Access

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Harmonising knowledge for safer materials via the "NanoCommons" Knowledge Base

Maier, D., Exner, T. E., Papadiamantis, A. G., Ammar, A., Tsoumanis, A., Doganis, P., Rouse, I., Slater, L. T., Gkoutos, G. V., Jeliazkova, N., Ilgenfritz, H., Ziegler, M., Gerhard, B., Kopetsky, S., Joshi, D., Walker, L., Svendsen, C., Sarimveis, H., Lobaskin, V. & Himly, M. & 7 others, van Rijn, J., Winckers, L., Millan Acosta, J., Willighagen, E., Melagraki, G., Afantitis, A. & Lynch, I., 13 Nov 2023, In: Frontiers in Physics. 11, 17 p., 1271842.

Research output: Contribution to journal › Article › Academic › peer-review

Open Access

PSnpBind-ML: predicting the effect of binding site mutations on protein-ligand binding affinity

Ammar, A., Cavill, R., Evelo, C. & Willighagen, E., 2 Mar 2023, In: Journal of Cheminformatics. 15, 1, 21 p., 31.

Research output: Contribution to journal › Article › Academic › peer-review

Open Access

Rendering co-author graphs using linked-open-data fromWikidata

Willighagen, E. & Waagmeester, A., 2023, BioHackrXiv Preprints, 3 p.

Research output: Working paper / Preprint › Preprint

The FAIR Cookbook - the essential resource for and by FAIR doers

Rocca-Serra, P., Gu, W., Ioannidis, V., Abbassi-Daloii, T., Capella-Gutierrez, S., Chandramouliswaran, I., Splendiani, A., Burdett, T., Giessmann, R. T., Henderson, D., Batista, D., Emam, I., Gadiya, Y., Giovanni, L., Willighagen, E., Evelo, C., Gray, A. J. G., Gribbon, P., Juty, N. & Welter, D. & 12 others, Quast, K., Plasterer, T., Wood, C., Van der horst, E., Reilly, D., Van vlijmen, H., Scollen, S., Lister, A., Thurston, M., Granell, R., FAIR Cookbook Contributors & Sansone, S.-A., 19 May 2023, In: Scientific data. 10, 1, 12 p., 292.

Research output: Contribution to journal › Article › Academic › peer-review

Open Access

Two years of explicit CiTO annotations

Willighagen, E., 3 Feb 2023, In: Journal of Cheminformatics. 15, 1, 8 p., 14.

Research output: Contribution to journal › Comment/Letter to the editor › Academic › peer-review

Open Access

Wikidata subsetting: Approaches, tools, and evaluation

Hosseini beghaeiraveri, S. A., Labra gayo, J. E., Waagmeester, A., Ammar, A., Gonzalez, C., Slenter, D., Ul-Hasan, S., Willighagen, E., Mcneill, F., Gray, A. J. G., Kaffee, L.-A. (Editor), Razniewski, S. (Editor) & Vougiouklis, P. (Editor), 27 Dec 2023, (E-pub ahead of print) In: Semantic web. p. 1-27 27 p.

Research output: Contribution to journal › Article › Academic › peer-review

Open Access

2022

An approach to the proposal of drug combination for cancer therapy using a pathway data connectivity approach

Miller, R., Muraru, S., Malpartida, A. B., Low, J., de Almeida, M. P., van Engelen, B., Godynyuk, E., Abecassis, B. S., Willighagen, E., Evelo, C. & Rieswijk, L., 21 Mar 2022, (ChemRxiv).

Research output: Working paper / Preprint › Working paper

Open Access

CAS Common Chemistry in 2021: Expanding Access to Trusted Chemical Information for the Scientific Community

Jacobs, A., Williams, D., Hickey, K., Patrick, N., Williams, A. J., Chalk, S., McEwen, L., Willighagen, E., Walker, M., Bolton, E., Sinclair, G. & Sanford, A., 13 Jun 2022, In: Journal of Chemical Information and Modeling. 62, 11, p. 2737-2743 7 p.

Research output: Contribution to journal › Article › Academic › peer-review

Open Access

Complex Portal 2022: new curation frontiers

Meldal, B. H. M., Perfetto, L., Combe, C., Lubiana, T., Cavalcante, J. V. F., Bye-A-Jee, H., Waagmeester, A., Del-Toro, N., Shrivastava, A., Barrera, E., Wong, E., Mlecnik, B., Bindea, G., Panneerselvam, K., Willighagen, E., Rappsilber, J., Porras, P., Hermjakob, H. & Orchard, S., 7 Jan 2022, In: Nucleic Acids Research. 50, D1, p. D578-D586 9 p.

Research output: Contribution to journal › Article › Academic › peer-review

Open Access

European Registry of Materials: global, unique identifiers for (undisclosed) nanomaterials

van Rijn, J., Afantitis, A., Culha, M., Dusinska, M., Exner, T. E., Jeliazkova, N., Longhin, E. M., Lynch, I., Melagraki, G., Nymark, P., Papadiamantis, A. G., Winkler, D. A., Yilmaz, H. & Willighagen, E., 24 Aug 2022, In: Journal of Cheminformatics. 14, 1, 10 p., 57.

Research output: Contribution to journal › Article › Academic › peer-review

Open Access

FAIR assessment tools: evaluating use and performance

Krans, N. A., Ammar, A., Nymark, P., Willighagen, E. L., Bakker, M. I. & Quik, J. T. K., Jul 2022, In: NanoImpact. 27, 10 p., 100402.

Research output: Contribution to journal › Article › Academic › peer-review

Open Access

Providing Adverse Outcome Pathways from the AOP-Wiki in a Semantic Web Format to Increase Usability and Accessibility of the Content

Martens, M., Evelo, C. T. & Willighagen, E. L., 1 Mar 2022, In: Applied in Vitro Toxicology. 8, 1, p. 2-13 12 p.

Research output: Contribution to journal › Article › Academic › peer-review

Open Access

PSnpBind: a database of mutated binding site protein-ligand complexes constructed using a multithreaded virtual screening workflow

Ammar, A., Cavill, R., Evelo, C. & Willighagen, E., 28 Feb 2022, In: Journal of Cheminformatics. 14, 1, 16 p., 8.

Research output: Contribution to journal › Article › Academic › peer-review

Open Access

Research Techniques Made Simple: Lipidomic Analysis in Skin Research

Sochorova, M., Vavrova, K., Fedorova, M., Ni, Z. X., Slenter, D., Kutmon, M., Willighagen, E. L., Letsiou, S., Torocsik, D., Marchetti-Deschmann, M., Zoratto, S., Kremslehner, C. & Gruber, F., 1 Jan 2022, In: Journal of Investigative Dermatology. 142, 1, p. 4-11.e1 9 p.

Research output: Contribution to journal › Article › Academic › peer-review

Open Access

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The AOP-DB RDF: Applying FAIR Principles to the Semantic Integration of AOP Data Using the Research Description Framework

Mortensen, H. M., Martens, M., Senn, J., Levey, T., Evelo, C. T., Willighagen, E. L. & Exner, T., 14 Feb 2022, In: Frontiers in Toxicology. 4, 6 p., 803983.

Research output: Contribution to journal › Article › Academic › peer-review

Open Access

The LOTUS initiative for open knowledge management in natural products research

Rutz, A., Sorokina, M., Galgonek, J., Mietchen, D., Willighagen, E., Gaudry, A., Graham, J. G., Stephan, R., Page, R., Vondrášek, J., Steinbeck, C., Pauli, G. F., Wolfender, J.-L., Bisson, J. & Allard, P.-M., 26 May 2022, In: Elife. 11, 41 p., e70780.

Research output: Contribution to journal › Article › Academic › peer-review

Open Access

The NORMAN Suspect List Exchange (NORMAN-SLE): facilitating European and worldwide collaboration on suspect screening in high resolution mass spectrometry

Taha, H. M., Aalizadeh, R., Alygizakis, N., Antignac, J. P., Arp, H. P. H., Bade, R., Baker, N., Belova, L., Bijlsma, L., Bolton, E. E., Brack, W., Celma, A., Chen, W. L., Cheng, T. J., Chirsir, P., Cirka, L., D'Agostino, L. A., Feunang, Y. D., Dulio, V. & Fischer, S. & 32 others, Gago-Ferrero, P., Galani, A., Geueke, B., Glowacka, N., Gluge, J., Groh, K., Grosse, S., Haglund, P., Hakkinen, P. J., Hale, S. E., Hernandez, F., Janssen, E. M. L., Jonkers, T., Kiefer, K., Kirchner, M., Koschorreck, J., Krauss, M., Krier, J., Lamoree, M. H., Letzel, M., Letzel, T., Li, Q. L., Little, J., Liu, Y. N., Lunderberg, D. M., Martin, J. W., McEachran, A. D., McLean, J. A., Meier, C., Meijer, J., Willighagen, E. L. & Schymanski, E. L., 1 Dec 2022, In: Environmental Sciences Europe. 34, 1, 26 p., 104.

Research output: Contribution to journal › Article › Academic › peer-review

Open Access

Understanding signaling and metabolic paths using semantified and harmonized information about biological interactions

Miller, R. A., Kutmon, M., Bohler, A., Waagmeester, A., Evelo, C. T. & Willighagen, E. L., Apr 2022, In: PLOS ONE. 17, 4, 21 p., e0263057.

Research output: Contribution to journal › Article › Academic › peer-review

Open Access

Unifying the identification of biomedical entities with the Bioregistry

Hoyt, C. T., Balk, M., Callahan, T. J., Domingo-Fernández, D., Haendel, M. A., Hegde, H. B., Himmelstein, D. S., Karis, K., Kunze, J., Lubiana, T., Matentzoglu, N., McMurry, J., Moxon, S., Mungall, C. J., Rutz, A., Unni, D. R., Willighagen, E., Winston, D. & Gyori, B. M., 19 Nov 2022, In: Scientific data. 9, 1, 13 p., 714.

Research output: Contribution to journal › Article › Academic › peer-review

Open Access

WikiPathways: Integrating Pathway Knowledge with Clinical Data

Slenter, D. N., Kutmon, M. & Willighagen, E. L., 1 Jan 2022, Physician's Guide to the Diagnosis, Treatment, and Follow-Up of Inherited Metabolic Diseases. Blau, N., Dionisi Vici, C., Ferreira, C. R., Vianey-Saban, C. & van Karnebeek, C. D. M. (eds.). Springer International Publishing, p. 1457-1466 10 p.

Research output: Chapter in Book/Report/Conference proceeding › Chapter › Academic

Open Access

File

50 Downloads (Pure)

Wikipedia on the CompTox Chemicals Dashboard: Connecting Resources to Enrich Public Chemical Data

Sinclair, G., Thillainadarajah, I., Meyer, B., Samano, V., Sivasupramaniam, S., Adams, L., Willighagen, E. L., Richard, A. M., Walker, M. & Williams, A. J., 24 Oct 2022, In: Journal of Chemical Information and Modeling. 62, 20, p. 4888-4905 18 p.

Research output: Contribution to journal › Article › Academic › peer-review

Open Access

2021

A catalogue of 863 Rett-syndrome-causing MECP2 mutations and lessons learned from data integration

Ehrhart, F., Jacobsen, A., Rigau, M., Bosio, M., Kaliyaperumal, R., Laros, J. F. J., Willighagen, E. L., Valencia, A., Roos, M., Capella-gutierrez, S., Curfs, L. M. G. & Evelo, C. T., 15 Jan 2021, In: Scientific data. 8, 1, 12 p., 10.

Research output: Contribution to journal › Article › Academic › peer-review

Open Access

A protocol for adding knowledge to Wikidata: aligning resources on human coronaviruses

Waagmeester, A., Willighagen, E. L., Su, A. I., Kutmon, M., Gayo, J. E. L., Fernández-álvarez, D., Groom, Q., Schaap, P. J., Verhagen, L. M. & Koehorst, J. J., 22 Jan 2021, In: Bmc Biology. 19, 1, 14 p., 12.

Research output: Contribution to journal › Article › Academic › peer-review

Open Access

A resource to explore the discovery of rare diseases and their causative genes

Ehrhart, F., Willighagen, E. L., Kutmon, M., van Hoften, M., Curfs, L. M. G. & Evelo, C. T., 4 May 2021, In: Scientific data. 8, 1, 8 p., 124.

Research output: Contribution to journal › Article › Academic › peer-review

Open Access

A Strategy Towards the Generation of Testable Adverse Outcome Pathways for Nanomaterials

Murugadoss, S., Vrcek, I. V., Pem, B., Jagiello, K., Judzinska, B., Sosnowska, A., Martens, M., Willighagen, E. L., Puzyn, T., Dusinska, M., Cimpan, M. R., Fessard, V. & Hoet, P. H., 2021, In: Altex-Alternatives To Animal Experimentation. 38, 4, p. 580-594 15 p.

Research output: Contribution to journal › Article › Academic › peer-review

Open Access

Bacting: a next generation, command line version of Bioclipse

Willighagen, E., 23 Jun 2021, In: Journal of Open Source Software. 6, 62, 2558.

Research output: Contribution to journal › Article › Academic › peer-review

Open Access

BridgeDb 3.0.4

Brenninkmeijer, C. Y., Willighagen, E. (Contact), Awasthi, M., Soiland-Reyes, S., Riutta, A., Pico, A., Dunlop, I., Kerber, R., Gray, A., Martens, M., Mélius, J., Summer-Kutmon, M. & Ehrhart, F., 26 Apr 2021

Research output: Non-textual / digital / web - outputs › Software › Academic

Open Access

BridgeDb 3.0.5

Willighagen, E., 29 Apr 2021

Research output: Non-textual / digital / web - outputs › Software › Academic

Open Access

Egon Willighagen

Research output

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