Personal profile
External positions
Editor-in-Chief Journal of Cheminformatics, Springer Nat, Springer Nature, Nat Human Behav
2017 → 2021
Keywords
- QD Chemistry
- ZA4050 Electronic information resources
- ZA4450 Databases
- QA76 Computer software
- QH301 Biology
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Research output
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COVID-19 Disease Map, building a computational repository of SARS-CoV-2 virus-host interaction mechanisms
Ostaszewski, M., Mazein, A., Gillespie, M. E., Kuperstein, I., Niarakis, A., Hermjakob, H., Pico, A. R., Willighagen, E. L., Evelo, C. T., Hasenauer, J., Schreiber, F., Dräger, A., Demir, E., Wolkenhauer, O., Furlong, L. I., Barillot, E., Dopazo, J., Orta-resendiz, A., Messina, F. & Valencia, A. & 5 others, , 5 May 2020, In: Scientific data. 7, 1, 4 p., 136.Research output: Contribution to journal › Article › Academic › peer-review
Open Access -
The metaRbolomics Toolbox in Bioconductor and beyond
Stanstrup, J., Broeckling, C. D., Helmus, R., Hoffmann, N., Mathe, E., Naake, T., Nicolotti, L., Peters, K., Rainer, J., Salek, R. M., Schulze, T., Schymanski, E. L., Stravs, M. A., Thevenot, E. A., Treutler, H., Weber, R. J. M., Willighagen, E., Witting, M. & Neumann, S., Oct 2019, In: Metabolites. 9, 10, 55 p., 200.Research output: Contribution to journal › (Systematic) Review article › peer-review
Open Access -
WikiPathways: a multifaceted pathway database bridging metabolomics to other omics research
Slenter, D. N., Kutmon, M., Hanspers, K., Riutta, A., Windsor, J., Nunes, N., Mélius, J., Cirillo, E., Coort, S. L., Digles, D., Ehrhart, F., Giesbertz, P., Kalafati, M., Martens, M., Miller, R., Nishida, K., Rieswijk, L., Waagmeester, A., Eijssen, L. M. T. & Evelo, C. T. & 2 others, , 4 Jan 2018, In: Nucleic Acids Research. 46, D1, p. D661-D667 7 p.Research output: Contribution to journal › Article › Academic › peer-review
Open Access -
The Chemistry Development Kit (CDK) v2.0: atom typing, depiction, molecular formulas, and substructure searching
Willighagen, E. L., Mayfield, J. W., Alvarsson, J., Berg, A., Carlsson, L., Jeliazkova, N., Kuhn, S., Pluskal, T., Rojas-Cherto, M., Spjuth, O., Torrance, G., Evelo, C. T., Guha, R. & Steinbeck, C., 6 Jun 2017, In: Journal of Cheminformatics. 9, 1, 19 p., 33.Research output: Contribution to journal › Article › Academic › peer-review
Open Access -
The eNanoMapper database for nanomaterial safety information
Jeliazkova, N., Chomenidis, C., Doganis, P., Fadeel, B., Grafstrom, R., Hardy, B., Hastings, J., Hegi, M., Jeliazkov, V., Kochev, N., Kohonen, P., Munteanu, C. R., Sarimveis, H., Smeets, B., Sopasakis, P., Tsiliki, G., Vorgrimmler, D. & Willighagen, E., 1 Jan 2015, In: Beilstein Journal of Nanotechnology. 6, 1, p. 1609-1634 26 p.Research output: Contribution to journal › Article › Academic › peer-review
Open Access
Datasets
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Gene/Protein BridgeDb ID Mapping Database (Ensembl Plants 56)
Abbassi-Daloii, T. (Creator) & Willighagen, E. (Contact), Zenodo, 31 Jan 2025
DOI: 10.5281/zenodo.14779267, https://github.com/bridgedb/create-bridgedb-genedb
Dataset/Software: Dataset
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Gene/Protein BridgeDb ID Mapping Database (Ensembl Fungi 56)
Abbassi-Daloii, T. (Creator) & Willighagen, E. (Contact), Zenodo, 31 Jan 2025
DOI: 10.5281/zenodo.14779315, https://github.com/bridgedb/create-bridgedb-genedb
Dataset/Software: Dataset
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Gene/Protein BridgeDb ID Mapping Database (Ensembl 111)
Tooba, A.-D. (Creator) & Willighagen, E. (Contact), Zenodo, 31 Jan 2025
Dataset/Software: Dataset
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Gene/Protein BridgeDb ID Mapping Database (Ensembl Metazoa 56)
Abbassi-Daloii, T. (Creator) & Willighagen, E. (Contact), Zenodo, 31 Jan 2025
DOI: 10.5281/zenodo.14779362, https://github.com/bridgedb/create-bridgedb-genedb
Dataset/Software: Dataset
Prizes
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Open Initiatives Trophies 2021 Runner up
Willighagen, E. (Recipient), 2021
Prize: Prize (including medals and awards) › Professional
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International Union of Pure and Applied Chemistry (External organisation)
Willighagen, E. (Member)
1 Jan 2024 → 31 Dec 2027Activity: Membership (due to research expertise) › Membership of committee › Professional
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Leerbaarheid
Willighagen, E. (Consultant / Advisor)
1 Jan 2013 → 31 Dec 2013Activity: Consultancy External › Consultancy External › Academic