UM Research Organisation

Research output

Research output per year 1976 2010 2011 2012 2013 2014 2015 2016 2017 2018 2019 2020 2021 2022 2023 2024

• 66066 Article
• 8479 Chapter
• 6772 Doctoral Thesis
• 4229 (Systematic) Review article
• 18521 More
  • 2760 Working paper
  • 2171 Editorial
  • 1707 Comment/Letter to the editor
  • 1702 Report
  • 1531 Conference article in proceeding
  • 1335 Case note
  • 1248 Book
  • 1195 Web publication/site
  • 1018 Book/Film/Article review
  • 854 Book editing
  • 524 Inaugural speech
  • 484 Paper
  • 455 Conference Abstract/Poster in journal
  • 441 Erratum / corrigendum / retractions
  • 248 Abstract
  • 145 Poster
  • 131 Preprint
  • 109 Digital or Visual Products
  • 91 Conference article in journal
  • 80 Discussion paper
  • 62 Special issue
  • 48 Foreword/postscript
  • 42 Conference Abstract/Poster in proceeding
  • 39 Entry for encyclopedia/dictionary
  • 35 Farewell speech
  • 30 Software
  • 27 Patent
  • 5 Short survey
  • 4 Exhibition

Research output per year

Research output per year

Search results

• A clinicogenomic model including GARD predicts outcome for radiation treated patients with HPV+ oropharyngeal squamous cell carcinoma

  Ho, E., De Cecco, L., Cavalieri, S., Sedor, G., Hoebers, F., Brakenhoff, R. H., Scheckenbach, K., Poli, T., Yang, K., Scarborough, J. A., Campbell, S., Koyfman, S., Eschrich, S. A., Caudell, J. J., Kattan, M. W., Licitra, L., Torres-Roca, J. F. & Scott, J. G., 14 Sept 2023, MedRxiv .

  Research output: Working paper / Preprint › Preprint

  Open Access

• A competitive search game with a moving target

  Duvocelle, B., Flesch, J., Staudigl, M. & Vermeulen, D., 2020, 34 p.

  Research output: Working paper / Preprint › Preprint

• Adaptive Deep Learning of Cross-Domain Loss in Collaborative Filtering

  Rafailidis, D. & Weiss, G., 2019, 10 p.

  Research output: Working paper / Preprint › Preprint

• A full year COVID-19 crisis with interrupted learning and two school closures: The effects on learning growth and inequality in primary education

  Haelermans, C., Jacobs, M., van Vugt, L., Aarts, B., Abbink, H., Smeets, C., van der Velden, R. & van Wetten, S., 9 Nov 2021, Center for Open Science, 54 p. (ROA External Reports).

  Research output: Working paper / Preprint › Preprint

  Open Access

• A learning rule balancing energy consumption and information maximization in a feed-forward neuronal network

  Grytskyy, D. & Jolivet, R. B., 11 Mar 2021.

  Research output: Working paper / Preprint › Preprint

  File
  25 Downloads (Pure)

• A Machine learning approach for rapid disaster response based on multi-modal data: The case of housing & shelter needs

  Ochoa, K. S. & Comes, T., 29 Jul 2021, Cornell University - arXiv, 14 p.

  Research output: Working paper / Preprint › Preprint

  Open Access

  File
  37 Downloads (Pure)

• Analyzing Partitioned FAIR Health Data Responsibly

  Sun, C., Ippel, L., Wouters, B., Soest, J. V., Malic, A., Adekunle, O., Berg, B. V. D., Puts, M., Mussmann, O., Koster, A., Kallen, C. V. D., Townend, D., Dekker, A. & Dumontier, M., 2 Dec 2018, Cornell University - arXiv, p. 1-6, 6 p. (arXiv.org).

  Research output: Working paper / Preprint › Preprint

  Open Access

• A Neural Attention Model for Adaptive Learning of Social Friends' Preferences

  Rafailidis, D. & Weiss, G., 2019, 10 p.

  Research output: Working paper / Preprint › Preprint

• A short commentary about compliance to assumptions and choice of the model in item response theory

  Collares, C. F., 13 Jul 2022.

  Research output: Working paper / Preprint › Preprint

  Open Access

• A survey on skein modules via braids

  Diamantis, I., 11 Nov 2023, Cornell University - arXiv, 34 p. (arXiv.org; No. 2311.06556v1).

  Research output: Working paper / Preprint › Preprint

  Open Access

  File
  16 Downloads (Pure)

• Asymmetric representation of aversive prediction errors in Pavlovian threat conditioning

  Ojala, K. E., Tzovara, A., Poser, B. A., Lutti, A. & Bach, D. R., 10 Jul 2020, Cold Spring Harbor Laboratory - bioRxiv.

  Research output: Working paper / Preprint › Preprint

  Open Access

• Attention networks and their interactions: From the lab to mobile virtual reality

  Tekampe, D., Sulaj, A., Hausfeld, L. & Schwartze, M., 19 Jan 2024, PsyArXiv Preprints.

  Research output: Working paper / Preprint › Preprint

• BioHackEU22 Report for Project 31: The What & How in data management: Improving connectivity between RDMkit and FAIR Cookbook

  Welter, D., Andrade Buono, R., Abbassi Daloii, T., Alper, P., Andrabi, M., Bianchini, F., Droesbeke, B., Fatima, N., Popleteeva, M., Portell Silva, L. & Rocca-Serra, P., 2023, BioHackrXiv Preprints, 7 p.

  Research output: Working paper / Preprint › Preprint

• BioHackEU23 report: Extending interoperability of experimental data using modular queries across biomedical resources

  Gadiya, Y., Ammar, A., Willighagen, E., Martinat, D., Sima, A. C., Balci, H. & Abbassi Daloii, T., 2023, Barcelona: BioHackrXiv Preprints, 9 p.

  Research output: Working paper / Preprint › Preprint

  Open Access

• Biologically Inspired Semantic Lateral Connectivity for Convolutional Neural Networks

  Weidler, T., Lehnen, J., Denman, Q., Sebők, D., Weiss, G., Driessens, K. & Senden, M., 20 May 2021, Cornell University - arXiv, (arXiv.org, Vol. 2105.09830).

  Research output: Working paper / Preprint › Preprint

  Open Access

• Blood-based DNA methylation and exposure risk scores predict PTSD with high accuracy in military and civilian cohorts

  Wani, A., Katrinli, S., Zhao, X., Daskalakis, N., Zannas, A., Aiello, A., Baker, D., Boks, M., Brick, L., Chen, C-Y., Dalvie, S., Fortier, C., Geuze, E., Hayes, J., Kessler, R., King, A., Koen, N., Liberzon, I., Lori, A., Luykx, J., & 22 othersMaihofer, A., Milberg, W., Miller, M., Mufford, M., Nugent, N., Rauch, S., Ressler, K., Risbrough, V., Rutten, B., Stein, D., Stein, M., Ursano, R., Verfaellie, M., Ware, E., Wildman, D., Wolf, E., Nievergelt, C., Logue, M., Smith, A., Uddin, M., Vermetten, E. & Vinkers, C., 15 Feb 2024, Research Square Company.

  Research output: Working paper / Preprint › Preprint

  Open Access

• Bounding and computing obstacle numbers of graphs

  Balko, M., Chaplick, S., Ganian, R., Gupta, S., Hoffmann, M., Valtr, P. & Wolff, A., 30 Jun 2022.

  Research output: Working paper / Preprint › Preprint

• Building expertise on FAIR through evolving Bring Your Own Data (BYOD) workshops: describing the data, software, and managementfocused approaches and their evolution

  Bernabé, C. H., Thielemans, L., Kaliyaperumal, R., Carta, C., Zhang, S., van Gelder, C. W. G., Benis, N., Santos, L. B. D. S., Cornet, R., dos Santos Vieira, B., Lalout, N., Henriques, I., Cámara Ballesteros, A., Burger, K., Kersloot, M. G., Ehrhart, F., Van Enckevort, E., Evelo, C., Gray, A., Hanauer, M., & 13 othersHettne, K., de Ligt, J., Pereira, A., Queralt-Rosinach, N., Schultes, E., Taruscio, D., Waagmeester, A., Wilkinson, M., Willighagen, E., Jansen, M., Mons, B., Roos, M. & Jacobsen, A., 2023, Data Intelligence, 23 p.

  Research output: Working paper / Preprint › Preprint

  Open Access

• Busting Outlaw Bikers: The Media Representation of Outlaw Motorcycle Gangs and Law Enforcement in the Meuse Rhine Euregion

  Geurtjens, K., 12 Jul 2019, Social Science Research Network (SSRN), p. 1-23, 23 p.

  Research output: Working paper / Preprint › Preprint

  Open Access

• Characterisation of laminar and vascular spatiotemporal dynamics of CBV and BOLD signals using VASO and ME-GRE at 7T in humans

  Dresbach, S., Huber, R., Gulban, O. F., Pizzuti, A., Trampel, R., Ivanov, D., Weiskopf, N. & Goebel, R., 26 Jan 2024, Cold Spring Harbor Laboratory - bioRxiv.

  Research output: Working paper / Preprint › Preprint

  Open Access

• Characterizing the Racial Discrepancy in Hypoxemia Detection in VV-ECMO: An ELSO Registry Analysis

  Kalra, A., Wilcox, C., Holmes, S. D., Tonna, J. E., Jeong, I. S., Rycus, P., Anders, M. M., Zaaqoq, A. M., Lorusso, R., Brodie, D., Keller, S. P., Kim, B. S., Whitman, G. J. R. & Cho, S-M., 17 Nov 2023, (Research Square).

  Research output: Working paper / Preprint › Preprint

  Open Access

• CiTO support for BioHackrXiv

  Willighagen, E., Ohta, T., Castro, L. J. & Prins, P., 2023, BioHackrXiv Preprints, 3 p.

  Research output: Working paper / Preprint › Preprint

  Open Access

• Clinical-grade whole genome sequencing-based haplarithmisis enables all forms of preimplantation genetic testing

  Janssen, A. E. J., Koeck, R. M., Essers, R., van Dijk, W., Drusedau, M., Meekels, J., Yaldiz, B., van de Vorst, M., Cao, P., de Koning, B., Hellebrekers, D. M. E. I., Stevens, S. J. C., Sun, S. M., Heijligers, M., de Munnik, S. A., van Uum, C. M. J., Achten, J., Hamers, L., Naghdi, M., Vissers, L. E. L. M., & 9 othersvan Golde, R. J. T., de Wert, G., Dreesen, J. C. F. M., de Die-Smulders, C., Coonen, E., Brunner, H. G., van den Wijngaard, A., Paulussen, A. D. C. & Zamani Esteki, M., 8 Dec 2023, 32 p.

  Research output: Working paper / Preprint › Preprint

• Community curation of kinetic data to supportmetabolic models through semantic web technology

  Slenter, D. & Willighagen, E., 2023, Zenodo, 21 p.

  Research output: Working paper / Preprint › Preprint

• Computing Dynamic User Equilibrium on Large-Scale Networks Without Knowing Global Parameters

  Viet Thong, D., Gibali, A., Staudigl, M. & Tuo Vong, P., 8 Oct 2020, 30 p.

  Research output: Working paper / Preprint › Preprint

  Open Access

• Contextual Encoder-Decoder Network for Visual Saliency Prediction

  Kroner, A., Senden, M., Driessens, K. & Goebel, R., Sept 2020, Cornell University - arXiv, p. 261-270, 10 p. (arXiv.org).

  Research output: Working paper / Preprint › Preprint

  Open Access
  45 Downloads (Pure)

• Creating, curating and querying computer models of biological pathways for Inherited Metabolic Disorders

  Slenter, D. & Willighagen, E., 2023, Cold Spring Harbor Laboratory - bioRxiv, 16 p.

  Research output: Working paper / Preprint › Preprint

• Current systems biology approaches in hazard assessment of nanoparticles

  Ehrhart, F., Evelo, C. T. A. & Willighagen, E., 1 Jan 2015, Cold Spring Harbor Laboratory - bioRxiv.

  Research output: Working paper / Preprint › Preprint

  Open Access

• Decoding biological age from face photographs using deep learning

  Zalay, O., Bontempi, D., Bitterman, D. S., Birkbak, N., Shyr, D., Haugg, F., Qian, J. M., Roberts, H., Perni, S., Prudente, V., Pai, S., Dekker, A., Haibe-Kains, B., Guthier, C., Balboni, T., Warren, L., Krishan, M., Kann, B. H., Swanton, C., Ruysscher, D. D., & 2 othersMak, R. H. & Aerts, H. J. W. L., 12 Sept 2023, MedRxiv .

  Research output: Working paper / Preprint › Preprint

  Open Access

• Depth-resolved ultra-high field fMRI reveals feedback contributions to surface motion perception

  Marquardt, I., De Weerd, P., Schneider, M., Gulban, O. F., Ivanov, D. & Uludağ, K., 30 May 2019, Cold Spring Harbor Laboratory - bioRxiv.

  Research output: Working paper / Preprint › Preprint

  Open Access

• Dissecting the genetic overlap between three complex phenotypes with trivariate MiXeR

  Shadrin, A. A., Hindley, G., Hagen, E., Parker, N., Tesfaye, M., Jaholkowski, P., Rahman, Z., Kutrolli, G., Fominykh, V., Djurovic, S., Smeland, O. B., O'Connell, K. S., van der Meer, D., Frei, O., Andreassen, O. A. & Dale, A. M., 27 Feb 2024, MedRxiv .

  Research output: Working paper / Preprint › Preprint

  Open Access

• Drawing Graphs with Circular Arcs and Right Angle Crossings

  Chaplick, S., Förster, H., Kryven, M. & Wolff, A., 2020, 14 p.

  Research output: Working paper / Preprint › Preprint

• Economic complexity and the sustainability transition: A review of data, methods, and literature

  Caldarola, B., Mazzilli, D., Napolitano, L., Patelli, A. & Sbardella, A., 14 Aug 2023, Cornell University - arXiv, 58 p. (arXiv.org; No. 2308.07172).

  Research output: Working paper / Preprint › Preprint

  Open Access

  File
  7 Downloads (Pure)

• Edge-Minimum Saturated k-Planar Drawings

  Chaplick, S., Klute, F., Parada, I., Rollin, J. & Ueckerdt, T., 26 Aug 2021, 23 p.

  Research output: Working paper / Preprint › Preprint

  Open Access

• Envy-free dynamic pricing schemes

  Bérczi, K., Codazzi, L., Golak, J. & Grigoriev, A., Jan 2023, Cornell University - arXiv, 19 p. (arXiv.org; No. 2301.01529).

  Research output: Working paper / Preprint › Preprint

  Open Access

• Epidemiology of Ischemic Stroke and Hemorrhagic Stroke in Venoarterial Extracorporeal Membrane Oxygenation

  Hwang, J., Kalra, A., Shou, B. L., Whitman, G., Wilcox, C., Brodie, D., Zaaqoq, A. M., Lorusso, R., Uchino, K. & Cho, S-M., 31 Jul 2023, 20 p. (Research Square).

  Research output: Working paper / Preprint › Preprint

  Open Access

• Epigenetic insights into neuropsychiatric and cognitive symptoms in Parkinson's disease: A DNA co-methylation network analysis

  Harvey, J., Smith, A. R., Weymouth, L. S., Smith, R. G., Castanho, I., Hubbard, L., Creese, B., Bresner, K., Williams, N., Pishva, E. & Lunnon, K., 21 Sept 2023, 25 p. (Research Square).

  Research output: Working paper / Preprint › Preprint

  Open Access

• Equivalence of Doubly Periodic Tangles

  Diamantis, I., Lambropoulou, S. & Mahmoudi, S., 1 Oct 2023, Cornell University - arXiv, 30 p. (arXiv.org; No. 2310.00822).

  Research output: Working paper / Preprint › Preprint

  File
  21 Downloads (Pure)

• Equivariant Passing-Bablok regression in quasilinear time

  Raymaekers, J. & Dufey, F., 16 Feb 2022, Cornell University - arXiv, (arXiv.org; No. 2202.08060).

  Research output: Working paper / Preprint › Preprint

  Open Access

  File
  26 Downloads (Pure)

• Evaluating the effect of denoising submillimeter auditory fMRI data with NORDIC

  Faes, L. K., Lage-Castellanos, A., Valente, G., Yu, Z., Cloos, M. A., Vizioli, L., Moeller, S., Yacoub, E. & De Martino, F., 25 Jan 2024, Cold Spring Harbor Laboratory - bioRxiv.

  Research output: Working paper / Preprint › Preprint

  Open Access

• Executed and imagined grasping movements can be decoded from lower dimensional representation of distributed non-motor brain areas

  Ottenhoff, M. C., Verwoert, M., Goulis, S., Colon, A. J., Wagner, L., Tousseyn, S., van Dijk, J. P., Kubben, P. L. & Herff, C., 2022, Cold Spring Harbor Laboratory - bioRxiv, 20 p.

  Research output: Working paper / Preprint › Preprint

  Open Access

• Expert-level pediatric brain tumor segmentation in a limited data scenario with stepwise transfer learning

  Boyd, A., Ye, Z., Prabhu, S., Tjong, M. C., Zha, Y., Zapaishchykova, A., Vajapeyam, S., Hayat, H., Chopra, R., Liu, K. X., Nabavidazeh, A., Resnick, A., Mueller, S., Haas-Kogan, D., Aerts, H. J. W. L., Poussaint, T. & Kann, B. H., 18 Sept 2023, MedRxiv .

  Research output: Working paper / Preprint › Preprint

  Open Access

• Extending Partial Representations of Rectangular Duals with Given Contact Orientations

  Chaplick, S., Kindermann, P., Klawitter, J., Rutter, I. & Wolff, A., Feb 2021, 14 p.

  Research output: Working paper / Preprint › Preprint

• First-Order Methods for Convex Optimization

  Dvurechensky, P., Staudigl, M. & Shtern, S., 2021, 73 p.

  Research output: Working paper / Preprint › Preprint

• Foundation Models for Quantitative Biomarker Discovery in Cancer Imaging

  Pai, S., Bontempi, D., Hadzic, I., Prudente, V., Sokac, M., Chaunzwa, T. L., Bernatz, S., Hosny, A., Mak, R. H., Birkbak, N. J. & Aerts, H. J. W. L., 5 Sept 2023, MedRxiv .

  Research output: Working paper / Preprint › Preprint

  Open Access

• Fully-automated sarcopenia assessment in head and neck cancer: development and external validation of a deep learning pipeline

  Ye, Z., Saraf, A., Ravipati, Y., Hoebers, F., Zha, Y., Zapaishchykova, A., Likitlersuang, J., Tishler, R. B., Schoenfeld, J. D., Margalit, D. N., Haddad, R. I., Mak, R. H., Naser, M., Wahid, K. A., Sahlsten, J., Jaskari, J., Kaski, K., Mäkitie, A. A., Fuller, C. D., Aerts, H. J. W. L., & 1 othersKann, B. H., 6 Mar 2023, MedRxiv , 28 p.

  Research output: Working paper / Preprint › Preprint

  Open Access

• Gaze Behaviour of Older Adults During Stair Negotiation: The Effect of Step Dimensions.

  de Thysebaert, I., Ackermans, T., Francksen, N., Thomas, N., Hollands, M., O'Brien, T., McCrum, C., Meijer, K. & Maganaris, C., 12 Sept 2023, OSF Preprints.

  Research output: Working paper / Preprint › Preprint

  Open Access

• Generalized Self-Concordant Analysis of Frank-Wolfe algorithms

  Dvurechensky, P., Safin, K., Shtern, S. & Staudigl, M., 2020, 44 p.

  Research output: Working paper / Preprint › Preprint

• Genomic Insights into the Shared and Distinct Genetic Architecture of Cognitive Function and Schizophrenia

  Wootton, O., Shadrin, A. A., Bjella, T., Smeland, O. B., van der Meer, D., Frei, O., O'Connell, K. S., Ueland, T., Andreassen, O. A., Stein, D. J. & Dalvie, S., 14 Nov 2023, MedRxiv .

  Research output: Working paper / Preprint › Preprint

  Open Access

• Granger Causality Testing in High-Dimensional VARs: a Post-Double-Selection Procedure

  Hecq, A., Margaritella, L. & Smeekes, S., 28 Feb 2019, Cornell University - arXiv, (arXiv.org; No. 1902.10991).

  Research output: Working paper / Preprint › Preprint

  Open Access

  File
  417 Downloads (Pure)