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2020

A 7 Tesla fMRI investigation of human tinnitus percept in cortical and subcortical auditory areas

Berlot, E., Arts, R., Smit, J., George, E., Gulban, O. F., Moerel, M., Stokroos, R., Formisano, E. & De Martino, F., 2020, In : NeuroImage: Clinical. 25, 11 p., 102166.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access

Adipose tissue in health and disease through the lens of its building blocks

Lenz, M., Arts, I. C. W., Peeters, R. L. M., de Kok, T. M. & Ertaylan, G., 26 Jun 2020, In : Scientific Reports. 10, 1, 14 p., 10433.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access

A dynamical model of the laminar BOLD response

Havlicek, M. & Uludag, K., 1 Jan 2020, In : Neuroimage. 204, 21 p., 116209.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access

Audiovisual and lexical cues do not additively enhance perceptual adaptation

Ullas, S., Formisano, E., Eisner, F. & Cutler, A., 2020, In : Psychonomic Bulletin & Review. 27, p. 707–715 9 p.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access

Behavioral effects of rhythm, carrier frequency and temporal cueing on the perception of sound sequences

Heynckes, M., De Weerd, P., Valente, G., Formisano, E. & De Martino, F., 5 Jun 2020, In : PLOS ONE. 15, 6, 17 p., 0234251.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access

Brain-Based Binary Communication Using Spatiotemporal Features of fNIRS Responses

Nagels-Coune, L., Benitez-Andonegui, A., Reuter, N., Lührs, M., Goebel, R., De Weerd, P., Riecke, L. & Sorger, B., 15 Apr 2020, In : Frontiers in Human Neuroscience. 14, 20 p., 113.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access

Conformal Feature-Selection Wrappers and ensembles for negative-transfer avoidance

Zhou, S., Smirnov, E., Schoenmakers, G., Peeters, R. & Wu, X., 15 Jul 2020, In : Neurocomputing. 397, p. 309-319 11 p.

Research output: Contribution to journalArticleAcademicpeer-review

COVID-19 Disease Map, building a computational repository of SARS-CoV-2 virus-host interaction mechanisms

Ostaszewski, M., Mazein, A., Gillespie, M. E., Kuperstein, I., Niarakis, A., Hermjakob, H., Pico, A. R., Willighagen, E. L., Evelo, C. T., Hasenauer, J., Schreiber, F., Dräger, A., Demir, E., Wolkenhauer, O., Furlong, L. I., Barillot, E., Dopazo, J., Orta-resendiz, A., Messina, F., Valencia, A. & 5 others, Funahashi, A., Kitano, H., Auffray, C., Balling, R. & Schneider, R., 5 May 2020, In : Scientific data. 7, 1, 4 p., 136.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Open Access

Dynamic time-locking mechanism in the cortical representation of spoken words

Nora, A., Faisal, A., Seol, J., Renvall, H., Formisano, E. & Salmelin, R., 8 Jun 2020, In : eNeuro.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access

Effects of synaptic and myelin plasticity on learning in a network of Kuramoto phase oscillators (vol 29, 083122, 2019)

Karimian, M., Dibenedetto, D., Moerel, M., Burwick, T., Westra, R. L., De Weerd, P. & Senden, M., Jun 2020, In : Chaos. 30, 6, 1 p., 069902.

Research output: Contribution to journalArticleAcademicpeer-review

EFMviz: A COBRA Toolbox extension to visualize Elementary Flux Modes in Genome-Scale Metabolic Models

Sarathy, C., Kutmon, M., Lenz, M., Adriaens, M. E., Evelo, C. T. & Arts, I. C. W., 12 Feb 2020, In : Metabolites. 10, 2, 14 p., 66.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access

Feedback contribution to surface motion perception in the human early visual cortex

Marquardt, I., De Weerd, P., Schneider, M., Gulban, O. F., Ivanov, D., Wang, Y. & Uludağ, K., 4 Jun 2020, In : Elife. 9, 28 p., e50933.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access

Fitter Mitochondria Are Associated With Radioresistance in Human Head and Neck SQD9 Cancer Cells

Grasso, D., Medeiros, H. C. D., Zampieri, L. X., Bol, V., Danhier, P., van Gisbergen, M. W., Bouzin, C., Brusa, D., Gregoire, V., Smeets, H., Stassen, A. P. M., Dubois, L. J., Lambin, P., Dutreix, M. & Sonveaux, P., 13 Mar 2020, In : Frontiers in Pharmacology. 11, 16 p., 263.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access

GAT-1 (rs2697153) and GAT-3 (rs2272400) polymorphisms are associated with febrile seizures and temporal lobe epilepsy

Schijns, O. E. M. G., Bisschop, J., Rijkers, K., Dings, J., Vanherle, S., Lindsey, P., Smeets, H. J. M. & Hoogland, G., Apr 2020, In : Epileptic Disorders. 22, 2, p. 176-182 7 p.

Research output: Contribution to journalArticleAcademicpeer-review

Heterogeneous Domain Adaptation for IHC Classification of Breast Cancer Subtypes

Ismailoglu, F., Cavill, R., Smirnov, E., Zhou, S., Collins, P. & Peeters, R., Feb 2020, In : IEEE/ACM Transactions on Computational Biology and Bioinformatics. 17, 1, p. 347-353 7 p.

Research output: Contribution to journalArticleAcademicpeer-review

High-density lipoprotein cholesterol efflux capacity is not associated with atherosclerosis and prevalence of cardiovascular outcome: The CODAM study

Josefs, T., Wouters, K., Tietge, U. J. F., Annema, W., Dullaart, R. P. F., Vaisar, T., Arts, I. C. W., van der Kallen, C. J. H., Stehouwer, C. D. A., Schalkwijk, C. G., Goldberg, I. J., Fisher, E. A. & van Greevenbroek, M. M. J., 2020, In : Journal of Clinical Lipidology. 14, 1, p. 122-132.e4 15 p.

Research output: Contribution to journalArticleAcademicpeer-review

Hippocampal-striatal functional connectivity supports processing of temporal expectations from associative memory

van de Ven, V., Lee, C., Lifanov, J., Kochs, S., Jansma, H. & De Weerd, P., 10 Apr 2020, In : Hippocampus.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access

Interfering with a memory without erasing its trace

Lange, G., Senden, M., Radermachere, A. & De Weerd, P., Jan 2020, In : Neural Networks. 121, p. 339-355 17 p.

Research output: Contribution to journalArticleAcademicpeer-review

Interleaved lexical and audiovisual information can retune phoneme boundaries

Ullas, S., Formisano, E., Eisner, F. & Cutler, A., May 2020, In : Attention Perception & Psychophysics. 82, 4, p. 2018-2026 9 p.

Research output: Contribution to journalArticleAcademicpeer-review

Interneuron hypomyelination is associated with cognitive inflexibility in a rat model of schizophrenia

Maas, D. A., Eijsink, V. D., Spoelder, M., van Hulten, J. A., De Weerd, P., Homberg, J. R., Vallès, A., Nait-Oumesmar, B. & Martens, G. J. M., 11 May 2020, In : Nature Communications. 11, 1, 2329.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access

Metabolic profiling of tissue-specific insulin resistance in human obesity: results from the Diogenes study and the Maastricht Study

DiOGenes Consortium, Jun 2020, In : International Journal of Obesity. 44, 6, p. 1376-1386 11 p.

Research output: Contribution to journalArticleAcademicpeer-review

Neural Correlates of Phonetic Adaptation as Induced by Lexical and Audiovisual Context

Ullas, S., Hausfeld, L., Cutler, A., Eisner, F. & Formisano, E., 14 Jul 2020, In : Journal of Cognitive Neuroscience. p. 1-14 14 p.

Research output: Contribution to journalArticleAcademicpeer-review

Phase-dependent amplification of working memory content and performance

Ten Oever, S., De Weerd, P. & Sack, A. T., 14 Apr 2020, In : Nature Communications. 11, 1, 8 p., 1832.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access

Reorganization of sound location processing in the auditory cortex of blind humans

van der Heijden, K., Formisano, E., Valente, G., Zhan, M., Kupers, R. & de Gelder, B., Mar 2020, In : Cerebral Cortex. 30, 3, p. 1103–1116 14 p.

Research output: Contribution to journalArticleAcademicpeer-review

Spectro-Temporal Processing in a Two-Stream Computational Model of Auditory Cortex

Zulfiqar, I., Moerel, M. & Formisano, E., 22 Jan 2020, In : Frontiers in Computational Neuroscience. 13, 18 p., 95.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Open Access

TfamKnockdown Results in Reduction of mtDNA Copy Number, OXPHOS Deficiency and Abnormalities in Zebrafish Embryos

Otten, A. B. C., Kamps, R., Lindsey, P., Gerards, M., Pendeville-Samain, H., Muller, M., van Tienen, F. H. J. & Smeets, H. J. M., 12 Jun 2020, In : Frontiers in Cell and Developmental Biology. 8, 11 p., 381.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access

Using web search queries to monitor influenza-like illness: an exploratory retrospective analysis, Netherlands, 2017/18 influenza season

Schneider, P. P., Spreeuwenberg, P., Hooiveld, M., Donker, G. A., Barnett, D. J. & Paget, J., 28 May 2020, In : Eurosurveillance. 25, 21, p. 13-22 10 p.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access

White matter structure and myelin-related gene expression alterations with experience in adult rats

Sampaio-Baptista, C., Vallès, A., Khrapitchev, A. A., Akkermans, G., Winkler, A. M., Foxley, S., Sibson, N. R., Roberts, M., Miller, K., Diamond, M. E., Martens, G. J. M., De Weerd, P. & Johansen-Berg, H., Apr 2020, In : Progress in Neurobiology. 187, 13 p., 101770.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
2019

243rd ENMC international workshop: Developing guidelines for management of reproductive options for families with maternally inherited mtDNA disease, Amsterdam, the Netherlands, 22-24 March 2019

Poulton, J., Steffann, J., Burgstaller, J., McFarland, R., Arbeithuber, B., Bengoa, J., Burgstaller, J., Chan, S., Chiaratti, M., Crouch, M., Dimond, R., Enriques, J. A., Gorman, G., Hyslop, L., Johnston, I., Kitto, J., Maguire, A., McFarland, R., Mitalipov, S., Otterloo, V. & 12 others, Poulton, J., Sallevelt, S., Smeets, H., Spits, C., St John, J., Steffann, J., Stewart, J., Stoneking, M., Thorburn, D., van der Veer, E., Wells, D. & Workshop Participants, Sep 2019, In : Neuromuscular Disorders. 29, 9, p. 725-733 9 p.

Research output: Contribution to journalArticleAcademicpeer-review

Accelerated estimation and permutation inference for ACE modeling

Chen, X., Formisano, E., Blokland, G. A. M., Strike, L. T., McMahon, K. L., de Zubicaray, G. I., Thompson, P. M., Wright, M. J., Winkler, A. M., Ge, T. & Nichols, T. E., 15 Aug 2019, In : Human Brain Mapping. 40, 12, p. 3488-3507 20 p.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access

A Co-expression Analysis of the Placental Transcriptome in Association With Maternal Pre-pregnancy BMI and Newborn Birth Weight

Cox, B., Tsamou, M., Vrijens, K., Neven, K. Y., Winckelmans, E., de Kok, T. M., Plusquin, M. & Nawrot, T. S., 29 Apr 2019, In : Frontiers in Genetics. 10, p. 1-13 13 p., 354.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access

A computational model of postprandial adipose tissue lipid metabolism derived using human arteriovenous stable isotope tracer data

O'Donovan, S. D., Lenz, M., Vink, R. G., Roumans, N. J. T., de Kok, T. M. C. M., Mariman, E. C. M., Peeters, R. L. M., van Riel, N. A. W., van Baak, M. A. & Arts, I. C. W., Oct 2019, In : PLoS Computational Biology. 15, 10, 23 p., e1007400.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access

A gain-of-function sodium channel beta 2-subunit mutation in painful diabetic neuropathy

Alsaloum, M., Estacion, M., Almomani, R., Gerrits, M. M., Boenhof, G. J., Ziegler, D., Malik, R., Ferdousi, M., Lauria, G., Merkies, I. S. J., Faber, C. G., Dib-Hajj, S., Waxman, S. G., de Greef, B., Hoeijmakers, J. G. J., Sopacua, M., Smeets, H. J. M., Vanoevelen, J. M., Eijkenboom, Lindsey, P. & 21 others, Almomani, R., Taiana, M., Marchi, M., Lombardi, R., Cazzato, D., Boneschi, F. M., Zauli, A., Clarelli, F., Santoro, S., Lopez, A. B., Quattrini, A., Cestele, S., Chever, O., Tavakoli, M., Malik, R., Kapetis, D., Xenakis, M. N., Mantegazza, M., Battiato, F., Strom, A. & PROPANE Study Grp, May 2019, In : Molecular Pain. 15, p. 1-14 14 p., 1744806919849802.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access

Altered DNA methylation in children born to mothers with rheumatoid arthritis during pregnancy

Ince-Askan, H., Mandaviya, P. R., Felix, J. F., Duijts, L., van Meurs, J. B., Hazes, J. M. W. & Dolhain, R. J. E. M., Sep 2019, In : Annals of the Rheumatic Diseases. 78, 9, p. 1198-1204 7 p.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access

Analysis of the genomic architecture of a complex trait locus in hypertensive rat models links Tmem63c to kidney damage

Schulz, A., Mueller, N. V., van de Lest, N. A., Eisenreich, A., Schmidbauer, M., Barysenka, A., Purfuerst, B., Sporbert, A., Lorenzen, T., Meyer, A. M., Herlan, L., Witten, A., Ruehle, F., Zhou, W., de Heer, E., Scharpfenecker, M., Panakova, D., Stoll, M. & Kreutz, R., 22 Mar 2019, In : Elife. 8, 33 p., 42068.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access

An integrative cross-omics analysis of DNA methylation sites of glucose and insulin homeostasis

Liu, J., Carnero-Montoro, E., van Dongen, J., Lent, S., Nedeljkovic, I., Ligthart, S., Tsai, P-C., Martin, T. C., Mandaviya, P. R., Jansen, R., Peters, M. J., Duijts, L., Jaddoe, V. W. V., Tiemeier, H., Felix, J. F., Willemsen, G., de Geus, E. J. C., Chu, A. Y., Levy, D., Hwang, S-J. & 37 others, Bressler, J., Gondalia, R., Salfati, E. L., Herder, C., Hidalgo, B. A., Tanaka, T., Moore, A. Z., Lemaitre, R. N., Jhun, M. A., Smith, J. A., Sotoodehnia, N., Bandinelli, S., Ferrucci, L., Arnett, D. K., Grallert, H., Assimes, T. L., Hou, L., Baccarelli, A., Whitsel, E. A., van Dijk, K. W., Amin, N., Uitterlinden, A. G., Sijbrands, E. J. G., Franco, O. H., Dehghan, A., Spector, T. D., Dupuis, J., Hivert, M-F., Rotter, J., Meigs, J. B., Pankow, J. S., van Meurs, J. B. J., Isaacs, A., Boomsma, D., Bell, J. T., Demirkan, A. & van Duijn, C. M., 13 Jun 2019, In : Nature Communications. 10, 11 p., 2581.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access

A novel mitochondrial m.4414T > C MT-TM gene variant causing progressive external ophthalmoplegia and myopathy

Hellebrekers, D. M. E. I., Blakely, E. L., Hendrickx, A. T. M., Hardy, S. A., Hopton, S., Falkous, G., de Coo, I. F. M., Smeets, H. J. M., van der Beek, N. M. E. & Taylor, R. W., Sep 2019, In : Neuromuscular Disorders. 29, 9, p. 693-697 5 p.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access

Association of dietary folate and vitamin B-12 intake with genome-wide DNA methylation in blood: a large-scale epigenome-wide association analysis in 5841 individuals

Mandaviya, P. R., Joehanes, R., Brody, J., Castillo-Fernandez, J. E., Dekkers, K. F., Do, A. N., Graff, M., Hänninen, I. K., Tanaka, T., de Jonge, E. A. L., Kiefte-de Jong, J. C., Absher, D. M., Aslibekyan, S., de Rijke, Y. B., Fornage, M., Hernandez, D. G., Hurme, M. A., Ikram, M. A., Jacques, P. F., Justice, A. E. & 28 others, Kiel, D. P., Lemaitre, R. N., Mendelson, M. M., Mikkilä, V., Moore, A. Z., Pallister, T., Raitakari, O. T., Schalkwijk, C. G., Sha, J., Slagboom, E. P. E., Smith, C. E., Stehouwer, C. D. A., Tsai, P-C., Uitterlinden, A. G., van der Kallen, C. J. H., van Heemst, D., Arnett, D. K., Bandinelli, S., Bell, J. T., Heijmans, B. T., Lehtimäki, T., Levy, D., North, K. E., Sotoodehnia, N., van Greevenbroek, M. M. J., van Meurs, J. B. J., Heil, S. G. & BIOS Consortium, CHARGE Consortium Epigenetics Working Group, CHARGE Consortium Nutrition Working Group, Aug 2019, In : American Journal of Clinical Nutrition. 110, 2, p. 437-450 14 p., 15.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access

A zebrafish model to study small-fiber neuropathy reveals a potential role for GDAP1

Eijkenboom, I., Vanoevelen, J. M., Hoeijmakers, J. G. J., Wijnen, I., Gerards, M., Faber, C. G. & Smeets, H. J. M., Jul 2019, In : Mitochondrion. 47, p. 273-281 9 p.

Research output: Contribution to journalArticleAcademicpeer-review

Beyond Pathway Analysis: Identification of Active Subnetworks in Rett Syndrome

Miller, R. A., Ehrhart, F., Eijssen, L. M. T., Slenter, D. N., Curfs, L. M. G., Evelo, C. T., Willighagen, E. L. & Kutmon, M., 21 Feb 2019, In : Frontiers in Genetics. 10, 10 p., 59.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access

Characterization of disease-specific cellular abundance profiles of chronic inflammatory skin conditions from deconvolution of biopsy samples

Garza, Z. C. F., Lenz, M., Liebmann, J., Ertaylan, G., Born, M., Arts, I. C. W., Hilbers, P. A. J. & van Riel, N. A. W., 17 Aug 2019, In : BMC Medical Genomics. 12, 1, 14 p., 121.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access