Research Output

2020

A 7 Tesla fMRI investigation of human tinnitus percept in cortical and subcortical auditory areas

Berlot, E., Arts, R., Smit, J., George, E., Gulban, O. F., Moerel, M., Stokroos, R., Formisano, E. & De Martino, F., 2020, In : NeuroImage: Clinical. 25, 11 p., 102166.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access

Adipose tissue in health and disease through the lens of its building blocks

Lenz, M., Arts, I. C. W., Peeters, R. L. M., de Kok, T. M. & Ertaylan, G., 26 Jun 2020, In : Scientific Reports. 10, 1, 14 p., 10433.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access

Audiovisual and lexical cues do not additively enhance perceptual adaptation

Ullas, S., Formisano, E., Eisner, F. & Cutler, A., 21 Apr 2020, In : Psychonomic Bulletin & Review. 9 p.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access

Behavioral effects of rhythm, carrier frequency and temporal cueing on the perception of sound sequences

Heynckes, M., De Weerd, P., Valente, G., Formisano, E. & De Martino, F., 5 Jun 2020, In : PLOS ONE. 15, 6, 17 p., 0234251.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access

Conformal Feature-Selection Wrappers and ensembles for negative-transfer avoidance

Zhou, S., Smirnov, E., Schoenmakers, G., Peeters, R. & Wu, X., 15 Jul 2020, In : Neurocomputing. 397, p. 309-319 11 p.

Research output: Contribution to journalArticleAcademicpeer-review

Dynamic time-locking mechanism in the cortical representation of spoken words

Nora, A., Faisal, A., Seol, J., Renvall, H., Formisano, E. & Salmelin, R., 8 Jun 2020, In : eNeuro.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access

Effects of synaptic and myelin plasticity on learning in a network of Kuramoto phase oscillators (vol 29, 083122, 2019)

Karimian, M., Dibenedetto, D., Moerel, M., Burwick, T., Westra, R. L., De Weerd, P. & Senden, M., Jun 2020, In : Chaos. 30, 6, 1 p., 069902.

Research output: Contribution to journalArticleAcademicpeer-review

EFMviz: A COBRA Toolbox extension to visualize Elementary Flux Modes in Genome-Scale Metabolic Models

Sarathy, C., Kutmon, M., Lenz, M., Adriaens, M. E., Evelo, C. T. & Arts, I. C. W., 12 Feb 2020, In : Metabolites. 10, 2, 14 p., 66.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access

Heterogeneous Domain Adaptation for IHC Classification of Breast Cancer Subtypes

Ismailoglu, F., Cavill, R., Smirnov, E., Zhou, S., Collins, P. & Peeters, R., Feb 2020, In : IEEE/ACM Transactions on Computational Biology and Bioinformatics. 17, 1, p. 347-353 7 p.

Research output: Contribution to journalArticleAcademicpeer-review

High-density lipoprotein cholesterol efflux capacity is not associated with atherosclerosis and prevalence of cardiovascular outcome: The CODAM study

Josefs, T., Wouters, K., Tietge, U. J. F., Annema, W., Dullaart, R. P. F., Vaisar, T., Arts, I. C. W., van der Kallen, C. J. H., Stehouwer, C. D. A., Schalkwijk, C. G., Goldberg, I. J., Fisher, E. A. & van Greevenbroek, M. M. J., 2020, In : Journal of Clinical Lipidology. 14, 1, p. 122-132.e4 15 p.

Research output: Contribution to journalArticleAcademicpeer-review

Interleaved lexical and audiovisual information can retune phoneme boundaries

Ullas, S., Formisano, E., Eisner, F. & Cutler, A., May 2020, In : Attention Perception & Psychophysics. 82, 4, p. 2018-2026 9 p.

Research output: Contribution to journalArticleAcademicpeer-review

Lexical and audiovisual bases of perceptual adaptation in speech

Ullas, S., 2020, Ipskamp Printing BV. 160 p.

Research output: ThesisDoctoral ThesisInternal

Open Access
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Metabolic profiling of tissue-specific insulin resistance in human obesity: results from the Diogenes study and the Maastricht Study

DiOGenes Consortium, Jun 2020, In : International Journal of Obesity. 44, 6, p. 1376-1386 11 p.

Research output: Contribution to journalArticleAcademicpeer-review

Modeling the Lipid Metabolism of a Genetically Minimal Cell

Bianchi, D. M., Breuer, M., Lam, V., Poddar, A., Wise, K. S., Hutchison, C. A., Smith, H. O., Villa, E., Ha, T., Glass, J. I. & Luthey-Schulten, Z., 7 Feb 2020, In : Biophysical Journal. 118, 3, p. 346A-346A 1 p.

Research output: Contribution to journalConference Abstract/Poster in journalAcademic

Modelling molecular processes in weight loss: Regulation of metabolic flexibility

Tareen, S. H. K., 2020, Maastricht: Maastricht University. 158 p.

Research output: ThesisDoctoral ThesisInternal

Open Access
File
72 Downloads (Pure)

Modelling the Genetic Information Processes of a Genetically Minimal Cell

Thornburg, Z. R., Melo, M. C. D. R., Bianchi, D., Brier, T. A., Breuer, M., Smith, H. O., Hutichison, C. A., Glass, J. I. & Luthey-Schulten, Z., 7 Feb 2020, In : Biophysical Journal. 118, 3, p. 461A-461A 1 p.

Research output: Contribution to journalConference Abstract/Poster in journalAcademic

Modelling the Nucleotide Metabolic Network of a Genetically Minimal Cell

Brier, T. A., Bianchi, D., Thornburg, Z. R., Melo, M. C. D. R., Breuer, M., Wise, K. S., Smith, H. O., Hutchison, C. A., Glass, J. I. & Luthey-Schulten, Z., 7 Feb 2020, In : Biophysical Journal. 118, 3, p. 460A-461A 2 p.

Research output: Contribution to journalConference Abstract/Poster in journalAcademic

Open Access
File
46 Downloads (Pure)

Neural Correlates of Phonetic Adaptation as Induced by Lexical and Audiovisual Context

Ullas, S., Hausfeld, L., Cutler, A., Eisner, F. & Formisano, E., 14 Jul 2020, In : Journal of Cognitive Neuroscience. p. 1-14 14 p.

Research output: Contribution to journalArticleAcademicpeer-review

On Agent-Based Models of Sex, Plants and Sustainability

Schüller, K., 2020, Maastricht: Maastricht University.

Research output: ThesisDoctoral ThesisInternal

Open Access
File
82 Downloads (Pure)

Reorganization of sound location processing in the auditory cortex of blind humans

van der Heijden, K., Formisano, E., Valente, G., Zhan, M., Kupers, R. & de Gelder, B., Mar 2020, In : Cerebral Cortex. 30, 3, p. 1103–1116 14 p.

Research output: Contribution to journalArticleAcademicpeer-review

Special Issue on Conformal and Probabilistic Prediction with Applications

Gammerman, A., Vovk, V., Luo, Z., Smirnov, E. & Peeters, R., 15 Jul 2020, In : Neurocomputing. 397, p. 264-265 2 p.

Research output: Contribution to journalEditorialAcademicpeer-review

Spectro-Temporal Processing in a Two-Stream Computational Model of Auditory Cortex

Zulfiqar, I., Moerel, M. & Formisano, E., 22 Jan 2020, In : Frontiers in Computational Neuroscience. 13, 18 p., 95.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Open Access

TfamKnockdown Results in Reduction of mtDNA Copy Number, OXPHOS Deficiency and Abnormalities in Zebrafish Embryos

Otten, A. B. C., Kamps, R., Lindsey, P., Gerards, M., Pendeville-Samain, H., Muller, M., van Tienen, F. H. J. & Smeets, H. J. M., 12 Jun 2020, In : Frontiers in Cell and Developmental Biology. 8, 11 p., 381.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access

Using web search queries to monitor influenza-like illness: an exploratory retrospective analysis, Netherlands, 2017/18 influenza season

Schneider, P. P., Spreeuwenberg, P., Hooiveld, M., Donker, G. A., Barnett, D. J. & Paget, J., 28 May 2020, In : Eurosurveillance. 25, 21, p. 13-22 10 p.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
2019

A bioinformatics workflow to decipher transcriptomic data from vitamin D studies

Muñoz García, A., Eijssen, L. M., Kutmon, M., Sarathy, C., Cengo, A., Hewison, M., Evelo, C. T., Lenz, M. & Coort, S. L., May 2019, In : Journal of Steroid Biochemistry and Molecular Biology. 189, p. 28-35 8 p.

Research output: Contribution to journalReview articleAcademicpeer-review

Open Access

Accelerated estimation and permutation inference for ACE modeling

Chen, X., Formisano, E., Blokland, G. A. M., Strike, L. T., McMahon, K. L., de Zubicaray, G. I., Thompson, P. M., Wright, M. J., Winkler, A. M., Ge, T. & Nichols, T. E., 15 Aug 2019, In : Human Brain Mapping. 40, 12, p. 3488-3507 20 p.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access

A Co-expression Analysis of the Placental Transcriptome in Association With Maternal Pre-pregnancy BMI and Newborn Birth Weight

Cox, B., Tsamou, M., Vrijens, K., Neven, K. Y., Winckelmans, E., de Kok, T. M., Plusquin, M. & Nawrot, T. S., 29 Apr 2019, In : Frontiers in Genetics. 10, p. 1-13 13 p., 354.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access

A computational model of postprandial adipose tissue lipid metabolism derived using human arteriovenous stable isotope tracer data

O'Donovan, S. D., Lenz, M., Vink, R. G., Roumans, N. J. T., de Kok, T. M. C. M., Mariman, E. C. M., Peeters, R. L. M., van Riel, N. A. W., van Baak, M. A. & Arts, I. C. W., Oct 2019, In : PLoS Computational Biology. 15, 10, 23 p., e1007400.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access

Acute MI Detection Derived From ECG Parameters Distribution

Aranda Hernandez, A. R., Karel, J., Bonizzi, P. & Peeters, R., 2019, Computing in Cardiology (CinC). Vol. 46. 4 p.

Research output: Chapter in Book/Report/Conference proceedingConference article in proceedingAcademicpeer-review

Open Access

Altered DNA methylation in children born to mothers with rheumatoid arthritis during pregnancy

Ince-Askan, H., Mandaviya, P. R., Felix, J. F., Duijts, L., van Meurs, J. B., Hazes, J. M. W. & Dolhain, R. J. E. M., Sep 2019, In : Annals of the Rheumatic Diseases. 78, 9, p. 1198-1204 7 p.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access

An energy efficient gait for humanoid robots walking on even and uneven terrains

Sun, Z., 2019, Maastricht: Maastricht University.

Research output: ThesisDoctoral ThesisInternal

Open Access
File
531 Downloads (Pure)

Association of dietary folate and vitamin B-12 intake with genome-wide DNA methylation in blood: a large-scale epigenome-wide association analysis in 5841 individuals

Mandaviya, P. R., Joehanes, R., Brody, J., Castillo-Fernandez, J. E., Dekkers, K. F., Do, A. N., Graff, M., Hänninen, I. K., Tanaka, T., de Jonge, E. A. L., Kiefte-de Jong, J. C., Absher, D. M., Aslibekyan, S., de Rijke, Y. B., Fornage, M., Hernandez, D. G., Hurme, M. A., Ikram, M. A., Jacques, P. F., Justice, A. E. & 28 others, Kiel, D. P., Lemaitre, R. N., Mendelson, M. M., Mikkilä, V., Moore, A. Z., Pallister, T., Raitakari, O. T., Schalkwijk, C. G., Sha, J., Slagboom, E. P. E., Smith, C. E., Stehouwer, C. D. A., Tsai, P-C., Uitterlinden, A. G., van der Kallen, C. J. H., van Heemst, D., Arnett, D. K., Bandinelli, S., Bell, J. T., Heijmans, B. T., Lehtimäki, T., Levy, D., North, K. E., Sotoodehnia, N., van Greevenbroek, M. M. J., van Meurs, J. B. J., Heil, S. G. & BIOS Consortium, CHARGE Consortium Epigenetics Working Group, CHARGE Consortium Nutrition Working Group, Aug 2019, In : American Journal of Clinical Nutrition. 110, 2, p. 437-450 14 p., 15.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access

A zebrafish model to study small-fiber neuropathy reveals a potential role for GDAP1

Eijkenboom, I., Vanoevelen, J. M., Hoeijmakers, J. G. J., Wijnen, I., Gerards, M., Faber, C. G. & Smeets, H. J. M., Jul 2019, In : Mitochondrion. 47, p. 273-281 9 p.

Research output: Contribution to journalArticleAcademicpeer-review

Beyond Pathway Analysis: Identification of Active Subnetworks in Rett Syndrome

Miller, R. A., Ehrhart, F., Eijssen, L. M. T., Slenter, D. N., Curfs, L. M. G., Evelo, C. T., Willighagen, E. L. & Kutmon, M., 21 Feb 2019, In : Frontiers in Genetics. 10, 10 p., 59.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access

Cell-free, circulating microRNAs reflect air pollution-induced environmental health risks

Krauskopf, J., van Veldhoven, K., Chadeau-Hyam, M., Vermeulen, R., Carrasco-Turigas, G., Nieuwenhuijsen, M., Vineis, P., de Kok, T. M. & Kleinjans, J. C. S., 15 Oct 2019, In : Toxicology Letters. 314, p. S68-S68 1 p.

Research output: Contribution to journalConference Abstract/Poster in journalAcademic

Characterization of disease-specific cellular abundance profiles of chronic inflammatory skin conditions from deconvolution of biopsy samples

Garza, Z. C. F., Lenz, M., Liebmann, J., Ertaylan, G., Born, M., Arts, I. C. W., Hilbers, P. A. J. & van Riel, N. A. W., 17 Aug 2019, In : BMC Medical Genomics. 12, 1, 14 p., 121.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access

Computational neuroimaging of real-life listening

De Angelis, V., 2019, Maastricht: Maastricht University. 129 p.

Research output: ThesisDoctoral ThesisInternal

Open Access
File
338 Downloads (Pure)

Consumption of Nitrate-Rich Beetroot Juice with or without Vitamin C Supplementation Increases the Excretion of Urinary Nitrate, Nitrite, and N-nitroso Compounds in Humans

Berends, J. E., van den Berg, L. M. M., Guggeis, M. A., Henckens, N. F. T., Hossein, I. J., de Joode, M. E. J. R., Zamani, H., van Pelt, K. A. A. J., Beelen, N. A., Kuhnle, G. G., de Kok, T. M. C. M. & Van Breda, S. G. J., 1 May 2019, In : International Journal of Molecular Sciences. 20, 9, 15 p., 2277.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access

Correlating Infant Fecal Microbiota Composition and Human Milk Oligosaccharide Consumption by Microbiota of 1-Month-Old Breastfed Infants

Borewicz, K., Gu, F., Saccenti, E., Arts, I. C. W., Penders, J., Thijs, C., van Leeuwen, S. S., Lindner, C., Nauta, A., van Leusen, E., Schols, H. A. & Smidt, H., Jul 2019, In : Molecular Nutrition & Food Research. 63, 13, p. 1-13 13 p., 1801214.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access

Cortical encoding of speech enhances task-relevant acoustic information

Rutten, S., Santoro, R., Hervais-Adelman, A., Formisano, E. & Golestani, N., Sep 2019, In : Nature human behaviour. 3, 9, p. 974-987 14 p.

Research output: Contribution to journalArticleAcademic

Cortical mechanisms of spatial hearing

van der Heijden, K., Rauschecker, J. P., de Gelder, B. & Formisano, E., Oct 2019, In : Nature Reviews Neuroscience. 20, 10, p. 609-623 15 p.

Research output: Contribution to journalReview articleAcademicpeer-review

CyTargetLinker app update: A flexible solution for network extension in Cytoscape

Kutmon, M., Ehrhart, F., Willighagen, E. L., Evelo, C. T. & Coort, S. L., 13 Aug 2019, In : F1000Research. 7, p. 743

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
File
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Detection of Spatio-Temporal Recurrent Patterns in Dynamical Systems

Bonizzi, P., Peeters, R., Zeemering, S., van Hunnik, A., Meste, O. & Karel, J., 2 Aug 2019, In : Frontiers in Applied Mathematics and Statistics. 5, 36, p. 1-13

Research output: Contribution to journalArticleAcademicpeer-review

Open Access