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  • 2025

    SynthBrainGrow: Synthetic Diffusion Brain Aging for Longitudinal MRI Data Generation in Young People

    Zapaishchykova, A., Kann, B. H., Tak, D., Ye, Z., Haas-Kogan, D. A. & Aerts, H. J. W. L., 2025, Deep Generative Models - 4th MICCAI Workshop, DGM4MICCAI 2024, Held in Conjunction with MICCAI 2024, Proceedings. Mukhopadhyay, A., Oksuz, I., Engelhardt, S., Mehrof, D. & Yuan, Y. (eds.). Springer Verlag, Vol. 15224 LNCS. p. 75-86 12 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), Vol. 15224 LNCS).

    Research output: Chapter in Book/Report/Conference proceedingConference article in proceedingAcademicpeer-review

  • 2024

    Cross-Care: Assessing the Healthcare Implications of Pre-training Data on Language Model Bias

    Chen, S., Gallifant, J., Gao, M., Moreira, P., Munch, N., Muthukkumar, A., Rajan, A., Kolluri, J., Fiske, A., Hastings, J., Aerts, H., Anthony, B., Celi, L. A., La Cava, W. G. & Bitterman, D. S., 1 Jan 2024, 38th Conference on Neural Information Processing Systems: NeurIPS 2024. Globerson, A., Mackey, L., Belgrave, D., Fan, A., Paquet, U., Tomczak, J. & Zhang, C. (eds.). Vancouver: Neural Information Processing Systems Foundation, Vol. 37. (Advances in Neural Information Processing Systems).

    Research output: Chapter in Book/Report/Conference proceedingConference article in proceedingAcademicpeer-review

    Open Access
  • Functional Outcome Prediction in Acute Ischemic Stroke

    Heylen, E., Bertels, J., Lambert, J., Demeestere, J., Ståhl, F., Holmberg, Å., van Zwam, W., Majoie, C., van der Lugt, A., Lemmens, R. & Maes, F., 1 Jan 2024, Brainlesion: Glioma, Multiple Sclerosis, Stroke and Traumatic Brain Injuries - 9th International Workshop, BrainLes 2023, and 3rd International Workshop, SWITCH 2023, Held in Conjunction with MICCAI 2023, Revised Selected Papers. Baid, U., Dorent, R., Malec, S., Pytlarz, M., Su, R., Wijethilake, N., Bakas, S. & Crimi, A. (eds.). Springer Verlag, Vol. 14668 LNCS. p. 124-133 10 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), Vol. 14668 LNCS).

    Research output: Chapter in Book/Report/Conference proceedingConference article in proceedingAcademicpeer-review

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  • Language Models are Surprisingly Fragile to Drug Names in Biomedical Benchmarks

    Gallifant, J., Chen, S., Moreira, P., Munch, N., Gao, M., Pond, J., Aerts, H., Celi, L. A., Hartvigsen, T. & Bitterman, D. S., 1 Jan 2024, EMNLP 2024 - 2024 Conference on Empirical Methods in Natural Language Processing, Findings of EMNLP 2024. Al-Onaizan, Y., Bansal, M. & Chen, Y.-N. (eds.). Association for Computational Linguistics (ACL), p. 12448-12465 18 p. (Proceedings of the Conference on Empirical Methods in Natural Language Processing, EMNLP).

    Research output: Chapter in Book/Report/Conference proceedingConference article in proceedingAcademicpeer-review

    Open Access
  • Multimodal Deep Learning for Functional Outcome Prediction in Endovascular Therapy

    te Nijenhuis, F., Su, R., van Doormaal, P. J., Hofmeijer, J., Martens, J., van Zwam, W., van der Lugt, A. & van Walsum, T., 1 Jan 2024, Brainlesion: Glioma, Multiple Sclerosis, Stroke and Traumatic Brain Injuries - 9th International Workshop, BrainLes 2023, and 3rd International Workshop, SWITCH 2023, Held in Conjunction with MICCAI 2023, Revised Selected Papers. Baid, U., Dorent, R., Malec, S., Pytlarz, M., Su, R., Wijethilake, N., Bakas, S. & Crimi, A. (eds.). Springer Verlag, Vol. 14668 LNCS. p. 144-153 10 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), Vol. 14668 LNCS).

    Research output: Chapter in Book/Report/Conference proceedingConference article in proceedingAcademicpeer-review

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  • Optimizing CycleGAN Design for CBCT-to-CT Translation: Insights into 2D vs 3D Modeling, Patch Size, and the Need for Tailored Evaluation Metrics

    Hadzic, I., Pai, S., Taasti, V. T., Bontempi, D., Zhovannik, I., Canters, R., Sonke, J. J., Dekker, A., Teuwen, J. & Traverso, A., 2 Apr 2024, Medical Imaging 2024: Image Processing. Colliot, O. & Mitra, J. (eds.). SPIE, Vol. 12926. 1292608. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; No. 1292608, Vol. 12926).

    Research output: Chapter in Book/Report/Conference proceedingConference article in proceedingAcademicpeer-review

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  • The Detection and Segmentation of Blush in the Lenticulostriate Territory

    Schielen, S. J. C., Huynh, D. H., Wagemans, B. A. J. M., Ruijters, D., van Zwam, W. H. & Zinger, S., 1 Jan 2024, Brainlesion: Glioma, Multiple Sclerosis, Stroke and Traumatic Brain Injuries - 9th International Workshop, BrainLes 2023, and 3rd International Workshop, SWITCH 2023, Held in Conjunction with MICCAI 2023, Revised Selected Papers. Baid, U., Dorent, R., Malec, S., Pytlarz, M., Su, R., Wijethilake, N., Bakas, S. & Crimi, A. (eds.). Springer Verlag, Vol. 14668 LNCS. p. 134-143 10 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), Vol. 14668 LNCS).

    Research output: Chapter in Book/Report/Conference proceedingConference article in proceedingAcademicpeer-review

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  • 2023

    AngioMoCo: Learning-Based Motion Correction in Cerebral Digital Subtraction Angiography

    Su, R., van der Sluijs, M., Cornelissen, S., van Zwam, W., van der Lugt, A., Niessen, W., Ruijters, D., van Walsum, T. & Dalca, A., 1 Jan 2023, Medical Image Computing and Computer Assisted Intervention: MICCAI 2023 - 26th International Conference, Proceedings. Greenspan, H., Madabhushi, A., Mousavi, P., Salcudean, S., Duncan, J., Syeda-Mahmood, T. & Taylor, R. (eds.). 7 ed. Springer Verlag, Vol. 14226. p. 770-780 11 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), Vol. 14226 LNCS).

    Research output: Chapter in Book/Report/Conference proceedingConference article in proceedingAcademicpeer-review

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  • 2022

    Synthetic data of simulated microcalcification clusters to train and explain deep learning detection models in contrast-enhanced mammography

    Van Camp, A., Beuque, M., Cockmartin, L., Woodruff, H. C., Marshall, N. W., Lobbes, M., Lambin, P. & Bosmans, H., 1 Jan 2022, 16th International Workshop on Breast Imaging: IWBI 2022. Bosmans, H., Marshall, N. & Van Ongeval, C. (eds.). SPIE, Vol. 12286. 122860U. (Proceedings of SPIE - The International Society for Optical Engineering; No. 122860U, Vol. 12286).

    Research output: Chapter in Book/Report/Conference proceedingConference article in proceedingAcademicpeer-review

    Open Access
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  • 2021

    Oropharyngeal Tumour Segmentation Using Ensemble 3D PET-CT Fusion Networks for the HECKTOR Challenge

    Rao, C., Pai, S., Hadzic, I., Zhovannik, I., Bontempi, D., Dekker, A., Teuwen, J. & Traverso, A., 13 Jan 2021, Head and Neck Tumor Segmentation. HECKTOR 2020. Andrearczyk, V., Oreiller, V. & Depeursinge, A. (eds.). Springer, Cham, p. 65-77 13 p. (Lecture Notes in Computer Science, Vol. 12603).

    Research output: Chapter in Book/Report/Conference proceedingConference article in proceedingAcademicpeer-review

    Open Access
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  • Quantitative Interpretation of Myocardial Fiber Structure in the Left and Right Ventricle of an Equine Heart Using Diffusion Tensor Cardiovascular Magnetic Resonance Imaging

    Straatman, H. C. H., Van Der Schoor, I., Froeling, M., Van Steenkiste, G., Holtackers, R. J. & Delhaas, T., 18 Jun 2021, Functional Imaging and Modeling of the Heart. FIMH 2021. Ennis, D. B., Perotti, L. E. & Wang, V. Y. (eds.). Springer, Cham, p. 178-188 (Lecture Notes in Computer Science, Vol. 12738).

    Research output: Chapter in Book/Report/Conference proceedingConference article in proceedingAcademicpeer-review

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  • 2020

    FASTRACK II magnetic resonance imaging sub-study Diffusion and perfusion biomarkers for renal SABR response

    Korte, J. C., Reynolds, H., Lasocki, A., Vanneste, B. G. L., Miclea, R., Backes, W. H., Sridharan, S., Sidhom, M., Rai, R., Kron, T., Hardcastle, N. & Siva, S., 16 Oct 2020, Micro-Mini & Nano Dosimetry and Innovative Technologies in Radiation Oncology. 1 ed. Vol. 1662. 012018. (Journal of Physics: Conference Series).

    Research output: Chapter in Book/Report/Conference proceedingConference article in proceedingAcademicpeer-review

  • Quantitative Comparison of Monte-Carlo Dropout Uncertainty Measures for Multi-class Segmentation

    Camarasa, R., Bos, D., Hendrikse, J., Nederkoorn, P., Kooi, E., Van Der Lugt, A. & De Bruijne, M., 5 Oct 2020, Uncertainty for Safe Utilization of Machine Learning in Medical Imaging, and Graphs in Biomedical Image Analysis. UNSURE 2020, GRAIL 2020. Sudre, C. H., Fehri, H., Arbel, T., Baumgartner, C. F., Dalca, A., Tanno, R., van Leemput, K., Wells, W. M., Sotiras, A., Papiez, B., Ferrante, E. & Parisot, S. (eds.). Springer, Cham, p. 32-41 10 p. (Lecture Notes in Computer Science, Vol. 12443).

    Research output: Chapter in Book/Report/Conference proceedingConference article in proceedingAcademicpeer-review

    Open Access
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  • 2018

    Breast Lesion Segmentation Software For Dce-Mri: An Open Source Gpgpu Based Optimization

    Zavala-Romero, O., Meyer-Baese, A. & Lobbes, M. B. I., 2018, 2018 IEEE 15TH INTERNATIONAL SYMPOSIUM ON BIOMEDICAL IMAGING (ISBI 2018). IEEE, p. 211-215 5 p. (IEEE International Symposium on Biomedical Imaging).

    Research output: Chapter in Book/Report/Conference proceedingConference article in proceedingAcademicpeer-review

  • Multi-level analysis of spatio-temporal features in non-mass enhancing breast tumors

    Tahmassebi, A., Ngo, D., Garcia, A., Castillo, E., Morales, D. P., Pinker-Domenig, K., Lobbes, M. & Meyer-Base, A., 2018, SMART BIOMEDICAL AND PHYSIOLOGICAL SENSOR TECHNOLOGY XV. SPIE-INT SOC OPTICAL ENGINEERING, 13 p. (Proceedings of SPIE, Vol. 10662).

    Research output: Chapter in Book/Report/Conference proceedingConference article in proceedingAcademicpeer-review

  • Quality assessment of transperineal ultrasound images of the male pelvic region using deep learning

    Camps, S., Houben, T., Edwards, C., Antico, M., Dunnhofer, M., Martens, E., Baeza, J., Vanneste, B., van Limbergen, E., de With, P., Verhaegen, F., Carneiro, G. & Fontanarosa, D., 2018, 2018 IEEE INTERNATIONAL ULTRASONICS SYMPOSIUM (IUS). IEEE, 4 p. (IEEE International Ultrasonics Symposium).

    Research output: Chapter in Book/Report/Conference proceedingConference article in proceedingAcademicpeer-review

  • 2017

    Dynamical Graph Theory Networks Techniques for the Analysis of Sparse Connectivity Networks in Dementia

    Tahmassebi, A., Pinker-Domenig, K., Wengert, G., Lobbes, M., Stadlbauer, A., Romero, F. J., Morales, D. P., Castillo, E., Garcia, A., Botella, G. & Meyer-Base, A., 2017, SMART BIOMEDICAL AND PHYSIOLOGICAL SENSOR TECHNOLOGY XIV. SPIE-INT SOC OPTICAL ENGINEERING, Vol. 10216. 8 p. 1021609. (Proceedings of SPIE, Vol. 10216).

    Research output: Chapter in Book/Report/Conference proceedingConference article in proceedingAcademicpeer-review

  • Evaluating Classifiers for Atherosclerotic Plaque Component Segmentation in MRI

    van Engelen, A., de Bruijne, M., Schneider, T., van Dijk, A. C., Kooi, M. E., Hendrikse, J., Nederveen, A., Niessen, W. J. & Botnar, R. M., 2017, MEDICAL IMAGE UNDERSTANDING AND ANALYSIS (MIUA 2017). Gonzalez-Castro, V. & Valdes Hernandez, M. (eds.). Springer International Publishing AG, Vol. 723. p. 156-168 13 p. (Communications in Computer and Information Science, Vol. 723).

    Research output: Chapter in Book/Report/Conference proceedingConference article in proceedingAcademicpeer-review

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  • Integration of Electrical, Structural, and Anatomical imaging for the guidance of Cardiac Resynchronization Therapy

    Nguyen, U. C., Cluitmans, M. J. M., Mihl, C., Luermans, J. J. G., Kietselaer, B. L. J. H., Bekkers, S. C. A. M., Gommers, S., Volders, P. G. A., Prinzen, F. W. & Vernooy, K., 2017, 2017 COMPUTING IN CARDIOLOGY (CINC). IEEE Computer Society, Vol. 44. p. 1-4 4 p. (Computing in Cardiology Conference, Vol. 44).

    Research output: Chapter in Book/Report/Conference proceedingConference article in proceedingAcademicpeer-review

    Open Access
  • Quantitative Collateral Grading on CT Angiography in Patients with Acute Ischemic Stroke

    Boers, A. M. M., Barros, R. S., Jansen, I. G. H., Slump, C. H., Dippel, D. W. J., van der Lugt, A., van Zwam, W. H., Roos, Y. B. W. E. M., van Oostenbrugge, R. J., Majoie, C. B. L. M., Marquering, H. A. & MR CLEAN Investigators, 2017, MOLECULAR IMAGING, RECONSTRUCTION AND ANALYSIS OF MOVING BODY ORGANS, AND STROKE IMAGING AND TREATMENT. Cardoso, M. J. & Arbel, T. (eds.). Springer International Publishing AG, Vol. 10555. p. 176-184 9 p. (Lecture Notes in Computer Science, Vol. 10555).

    Research output: Chapter in Book/Report/Conference proceedingConference article in proceedingAcademicpeer-review

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  • The Driving Regulators of the Connectivity Protein Network of Brain Malignancies

    Tahmassebi, A., Pinker-Domenig, K., Wengert, G., Lobbes, M., Stadlbauer, A., Wildburger, N. C., Romero, F. J., Morales, D. P., Castillo, E., Garcia, A., Botella, G. & Meyer-Base, A., 2017, SMART BIOMEDICAL AND PHYSIOLOGICAL SENSOR TECHNOLOGY XIV. SPIE-INT SOC OPTICAL ENGINEERING, 8 p. 1021605. (Proceedings of SPIE, Vol. 10216).

    Research output: Chapter in Book/Report/Conference proceedingConference article in proceedingAcademicpeer-review

  • The Effect of Non-contrast CT Slice Thickness on Thrombus Density and Perviousness Assessment

    Tolhuisen, M. L., Enthoven, J., Santos, E. M. M., Niessen, W. J., Beenen, L. F. M., Dippel, D. W. J., van der Lugt, A., van Zwam, W. H., Roos, Y. B. W. E. M., van Oostenbrugge, R. J., Majoie, C. B. L. M. & Marquering, H. A., 2017, MOLECULAR IMAGING, RECONSTRUCTION AND ANALYSIS OF MOVING BODY ORGANS, AND STROKE IMAGING AND TREATMENT. Cardoso, M. J. & Arbel, T. (eds.). 1 ed. Springer International Publishing AG, p. 168-175 8 p. (Lecture Notes in Computer Science, Vol. 10555).

    Research output: Chapter in Book/Report/Conference proceedingConference article in proceedingAcademicpeer-review

    Open Access
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  • 2016

    Computer-Aided Diagnosis of Diagnostically Challenging Lesions in Breast MRI: A Comparison between a Radiomics and a Feature-Selective Approach

    Hoffmann, S., Lobbes, M., Houben, I., Pinker-Domenig, K., Wengert, G., Burgeth, B., Meyer-Base, U., Lemaitre, G. & Meyer-Baese, A., 2016, SENSING AND ANALYSIS TECHNOLOGIES FOR BIOMEDICAL AND COGNITIVE APPLICATIONS 2016. Dai, L., Zheng, Y., Chu, H. & Meyer-Bäse, A. D. (eds.). SPIE-INT SOC OPTICAL ENGINEERING, Vol. 9871. 7 p. (Proceedings of SPIE; No. 98710H, Vol. 9871).

    Research output: Chapter in Book/Report/Conference proceedingConference article in proceedingAcademicpeer-review

  • Proteomic Data Analysis of Glioma Cancer Stem-Cell Lines Based on Novel Nonlinear Dimensional Data Reduction Techniques

    Lespinats, S., Pinker-Domenig, K., Wengert, G., Houben, I., Lobbes, M., Stadlbauer, A. & Meyer-Base, A., 2016, SENSING AND ANALYSIS TECHNOLOGIES FOR BIOMEDICAL AND COGNITIVE APPLICATIONS 2016. Dai, L., Zheng, Y., Chu, H. & Meyer-Bäse, A. D. (eds.). SPIE-INT SOC OPTICAL ENGINEERING, Vol. 9871. 8 p. (Proceedings of SPIE; No. 98710T, Vol. 9871).

    Research output: Chapter in Book/Report/Conference proceedingConference article in proceedingAcademicpeer-review